Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0906 ATGGAGACCTTGTGGCGGACTCGTGACAGACTTGCGGCAGAGCTTCGGGCCAACCTGGCCGGGCCCAATTGGCCTGTTAGGCTAATGGCCGGCCAAATTGGCCAGATTTTATTTAGGCCATCattttttgagcccagcccaGCCCATTTTATGGGTTGGCTGACCCATCAGAGTAAGCGCTGCGGCTTGTGTTGCGTTGGATCATCGACAGCGAAAATGCCATCCCACAAGACTTTCAGGATCAAGAAGAAGCTCGCCAAGAAGATGAGGCAGAACAGGCCCATCCCTTACTGGATCCGCATGAGGACCGACAACACTATCAGGTATAATGCTAAGCGCAGGCACTGGCGCCGCACCAAGCTCGGATTTTAA 372 0.5134 METLWRTRDRLAAELRANLAGPNWPVRLMAGQIGQILFRPSFFEPSPAHFMGWLTHQSKRCGLCCVGSSTAKMPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0906 123 Hamap 50S ribosomal protein L39e [rpl39e]. 73 123 IPR000077 GO:0003735|GO:0005840|GO:0006412
Ssu6g0906 123 SUPERFAMILY Ribosomal protein L39e 75 122 IPR023626 -
Ssu6g0906 123 Pfam Ribosomal L39 protein 81 121 IPR000077 GO:0003735|GO:0005840|GO:0006412
Ssu6g0906 123 ProSitePatterns Ribosomal protein L39e signature. 102 118 IPR020083 GO:0003735|GO:0005840|GO:0006412
Ssu6g0906 123 PANTHER RIBOSOMAL PROTEIN L39E 44 123 - -
Ssu6g0906 123 Gene3D Ribosomal protein L39e 73 123 IPR023626 -
Ssu6g0906 123 PANTHER 60S RIBOSOMAL PROTEIN L39-2 44 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0906 Ssu-Chr6 14690622 14692634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0906 73 123 Cytoplasmic Ribosomal Protein Gene Family AT4G31985 90.196 1.16e-28 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0906 K02924 - sspl:121807082 112.849