Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0903 ATGGCTTCAAGTCTCGTTGTTTTCTTCACTGTCCTTCTTACCTTCTTCCTCCCTCTCAAATCTCACTCCTCCGCAGATTCCCCTTCGTGGGTGAAAGCCGGTTATTACTATTCAGGCAGTGAAATTTCTGCTTCAGACATAAAAGCCGCGCTTTTCACTCACCTCTTGTGCGCTTTTGCTTTCATAAACTCCACCAGCTACAACGTCTTCATCAACTCTTCGGAGGAGCACAAGTTCTCCACCTTCACCAACACGGTGAAGCTCCAAAACCCGTCTGTTTCAACGCTTCTATCCATCTGGGGTGGCGTAGAGGACAATTCGGTGTTTTCCTCAATGCTGAATCAATCTTCTCATAGAAAAATTTTCATCGATTCTTCCATCATAACGGCGAGGCTCTATGGCTTTCATGGCATAGACCTTACTGGGGCACGGCCAAGGCAAGAAGGCTCAGAGGTTACCAACTTAGGAACCTTTTTGAAGGAGTGGCGTGCTGCAATAACTTCCGAGGCAAGAAACTCTAACAAGTCAGAGTTGTTGTTGGTGATGGCAGGTTACTACCTTAAGGCTTCAGACTCCGTGAGTTACCCCTTTGATTCGATGCAGGAGAATTTGGACTGGGTGCATTTTGTGGCATATGATTACTATCTTCCTAAGGAGGACAATGTCACGGGTTTTCATGCGGCTTTGTATGGTTCATCTGGTTGGGATAACACTGATTCTGGTATCAGAGAGTGGAGGAGGAGGGGGTTCTCGTCCAACAAACTATTAATTGGGTTGCCTTATCATGGATACGCGTGGACACTTGTGACCCCTGGAGCAAACAGTGGCGTGGGAACACAGGCATCAGGACCTGCCGTTACAATGGATGGTTCCATGGCTTATAAGTTGATAAAGAGCTACATTGCAAGCTTTGGAAATGGAGTTGTTTCACATTACAATGCTACTTTGGTGGTCAATCAGTTCACTGTTGCGTCTACCACTTGGGTTAATTTTGATGATGCGGAGGTAATCAAGGCCAAAGTTTCCTATGCAAGGAAAAATGGGCTACTTGGTTACAACGTGTTCCAAGTAGGCAATGACGAAAATTGGGAACTTTCAAAGGGGGCAGCTCAAGAAGTAGATGAAGATCATCATAAGAGGAGGTTGGTGATAATTGTTCTGCTTACAACTCTGACTTTGGCGCTTCTGTTGGGAATAGTATTTTGCTACTACCACCGAGGAACAGTAGCCActgttacaaaaatattatataaactgaGATATTTATCAGCAGCAGAAGAAGATATCGATGGAAACGCTTCTGATCTTATAGTATTCAGTTATCTCACAATTAAAGTGGCAACAAATAACTTCTCAAAAGATAATAGGCTTGGAGAGGGTGGATTTGGCACAGTGTACAAGGGCAAATTACGGAAGGGTCAGGAAATAGCTGTAAAAAGACTCTCAGAGACCTCAAATCAAGGCCTTGAAGAGTTCAAGAATGAGATCACGCTTACAGCAAGGCTACAACATGTGAATTTAGTTAGACTTCTGGGTTACTGCACAAAAAGGGATGAGAAGATTCTGATCTATGAATACCTGCCGAACAAAAGCTTCGATCATTTCCTCTTTGATCCAAGGAAATCAATTCTTTTAGACTGGAACAAGCGTGTCAATATCATTGAAGGCGTTACTCAAGGCCTTCTTTATCTCCAAGAGTACTCAAATTTCACTATAATCCACCGAGATCTTAAAGCTAGTAATGTTTTGCTAGATAATGATATGAATCCAAAGATATCAGATTTTGGTATGGCTAGAATTTTCAGGAAATATGACCTTGAAGCAAACACAAGCAGGATCGTTGGAACATATGGGTACGTACCTCCTGAGTATGTGAGAAAAGGCATATACTCAACGAAGTACGATGTGTATAGTTTTGGAGTTCTTCTCTTGCAGATCATAAGCGGAAAGAGGACTTCATGTTATTACGGCACGCATGAAAATATGACCCTTTTGGAATATGCATATGAGCTATGGAAGGAAGGTAGAGGTGTGGAGTTTGTCGACCCGTCATTGGATGATACAAACTCGCCTTGTAAAATCATGAGATGCATGCAGGTGGCTCTGTTGTGCGTTCAAGAGAACTCTGCGGATAGACCTTCCATGTTGGAAGTTGATTCACTGCTGAAGAATGAAGGTGCAGCTATTGGTACTCCCAAAATGCCTGCGTTTTCAATTAAGAAACGTGAAGATGAGGAAGAAACATCTCAAAACGGGATCAAACTCTACTCAATCAATGATGTTACAATTTCTCAACTGGCACCAAGATGA 2310 0.4255 MASSLVVFFTVLLTFFLPLKSHSSADSPSWVKAGYYYSGSEISASDIKAALFTHLLCAFAFINSTSYNVFINSSEEHKFSTFTNTVKLQNPSVSTLLSIWGGVEDNSVFSSMLNQSSHRKIFIDSSIITARLYGFHGIDLTGARPRQEGSEVTNLGTFLKEWRAAITSEARNSNKSELLLVMAGYYLKASDSVSYPFDSMQENLDWVHFVAYDYYLPKEDNVTGFHAALYGSSGWDNTDSGIREWRRRGFSSNKLLIGLPYHGYAWTLVTPGANSGVGTQASGPAVTMDGSMAYKLIKSYIASFGNGVVSHYNATLVVNQFTVASTTWVNFDDAEVIKAKVSYARKNGLLGYNVFQVGNDENWELSKGAAQEVDEDHHKRRLVIIVLLTTLTLALLLGIVFCYYHRGTVATVTKILYKLRYLSAAEEDIDGNASDLIVFSYLTIKVATNNFSKDNRLGEGGFGTVYKGKLRKGQEIAVKRLSETSNQGLEEFKNEITLTARLQHVNLVRLLGYCTKRDEKILIYEYLPNKSFDHFLFDPRKSILLDWNKRVNIIEGVTQGLLYLQEYSNFTIIHRDLKASNVLLDNDMNPKISDFGMARIFRKYDLEANTSRIVGTYGYVPPEYVRKGIYSTKYDVYSFGVLLLQIISGKRTSCYYGTHENMTLLEYAYELWKEGRGVEFVDPSLDDTNSPCKIMRCMQVALLCVQENSADRPSMLEVDSLLKNEGAAIGTPKMPAFSIKKREDEEETSQNGIKLYSINDVTISQLAPR 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0903 769 CDD STKc_IRAK 457 724 - -
Ssu6g0903 769 Gene3D Phosphorylase Kinase; domain 1 414 526 - -
Ssu6g0903 769 CDD GH18_plant_chitinase_class_V 28 366 - -
Ssu6g0903 769 ProSitePatterns Serine/Threonine protein kinases active-site signature. 572 584 IPR008271 GO:0004672|GO:0006468
Ssu6g0903 769 Pfam Glycosyl hydrolases family 18 35 360 IPR001223 GO:0005975
Ssu6g0903 769 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 30 376 IPR001223 GO:0005975
Ssu6g0903 769 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 22 765 - -
Ssu6g0903 769 ProSiteProfiles Protein kinase domain profile. 451 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0903 769 ProSitePatterns Protein kinases ATP-binding region signature. 457 479 IPR017441 GO:0005524
Ssu6g0903 769 Pfam Protein kinase domain 452 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0903 769 SUPERFAMILY Protein kinase-like (PK-like) 435 720 IPR011009 -
Ssu6g0903 769 SMART 2g34 30 360 IPR011583 GO:0008061
Ssu6g0903 769 Gene3D - 261 331 IPR029070 -
Ssu6g0903 769 SUPERFAMILY (Trans)glycosidases 33 361 IPR017853 -
Ssu6g0903 769 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 22 765 - -
Ssu6g0903 769 SMART serkin_6 451 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0903 769 Gene3D Transferase(Phosphotransferase) domain 1 527 729 - -
Ssu6g0903 769 Gene3D Glycosidases 45 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0903 Ssu-Chr6 14638316 14642351 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0903 439 769 Receptor kinase-like Gene Family AT4G11530 51.775 6.81e-116 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu6g0903 Glyco_hydro_18 2e-53 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0903 - - aprc:113847882 1261.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0903 6 14638316 14642351 Ssu6g0903 6 14638316 14642351 ECH