Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0902 ATGTCGTTCAGAATGGTGCTTGTCCTCTCCCTTCACGTTTTCATCTGCGCTCTGATGTTCCAATCCTCAGAAGCTACTGTTCAATCATGGTTCAAAATTGGTTACTGGTATAACGGCAGTGAGTTTCCCGTATCCGATATCAACTCTGCCTTCTATACTCACCTGATATGCGCTTTCGCGGATGTGAACACTTCCTCCTTTGAGATCTCCGTCTCCTCATCAAACCAGCAAAGCTTCTCTACTTTCACAAACACCGTCAAACTCAAGAACCCTTCCATCACCACACTTCTCTCCACTGGCGGAGACCAAAACAGCGTTGCCATCAAATCCATGCTTAGCAACACTTCTTCAAGGAAACCCTTCATTCAATCTTCCATAAGACTGGCCAGGCTTTACGGTTTCCAGGGCCTGGACCTCTCCTGGTCTACCATTGAGACATCCTCTGATGCAGACAACCTGGGACAGCTTTTCCGAGAGTGGCGGGTTGCCGCAAAATCTGAGGCAGAAGCTAACTCTACACTTCCAGAATTGATCCTAACCGCTGCTGTTCAAGCTTCACCGGATTTGGTTAACGGGTCCTACCCAGTGGACTCAATAAGAAGTAACTTGAATTGGATACATGTCAATACATACTCTTACCATACACCCACGAGACAAAACTTCACTGCTGCACCTTCAGCTTTATACGACCCTGGTAGTAATCATATCAGCACAGACTATTATATCAAGGCTTGGCTTGGGAAGGAGTTAGCTGCTAACATGTTGATTTTGGGTTTGCCTTTCTTTGGGTTTGAATGGACACTCCAAAACCCCAGTAACAACAAAATAGGTGCACTAGCAACGGGTCCAGCAGGTGCCGCCGACGATGGATCTATAAGCTATAAGGATATAAAGAATGTTATTCAGCAAAATGGGGCTGCAGTACTGTATAATGACACTTATGTTACGAATTACTGCTCATTTGATTCAACATGGATTGGCTTTGACGATGTCGAGGTTGTTCAAAAGAAGGTGTCGTATGCCCGGGAAAAGGGGCTACTTGGCTACTACGTTTGGCAAATTTCCCATGACGACGACAACTGGACACTTTCTCGCGCAGCAGCTGAACAGGTTGACGACGACAAACAGAAACGGTGGAAATTGTTAGTGATCATTTTGAGTATAATTGCTACCGTTATTCTCATGTTAGGCGTCACAATCTGCTTCCAAAGGAACAGAATATTCAAATCAACTGGGACACTCAATGCTGTTAAACATGCACGGCCTAGAGTGAATAATAAAGAAGCTGCAGGGCCTTTTCATGGGGATGCTCCAGATTTACATGTCTATAGATTTTCTGACATTGAAGCGGCTACAAATGAATTTTCATATGAAAACAAGCTCGGACAGGGTGGTTATGGTCCTGTTTACAAGGGCATCCTACCTGATGGTCAGGAAATAGccgtaaaaaaattatcaaaagctTCTACACAAGGATTCGAGGAATTCAAAAATGAGGTAACACTAACAGCAAGGCTACAACATGTGAATCTTGTCCAGTTGTTGGGTTTCTGCATTGAACGAGGGGAGCAGATGCTGGTGTATGAGTACATGGCTAATAAAAGCTTGGACTTCTAcctttttgATCCTATTAGACGACTTTTGTTAGACTGGAATAAGCGCGTTGGCATCATAGACGGAATTACGCAAGGTCTTCTTTATCTTCAAGAATATTCGAGATTCACAATAATTCATAGAGACTTGAAAGCTagcaatattttattagaccCTGAGATGAAGCCAAAGATATCAGACTTTGGGATGGCTAGAATATTCACAAAAAATGAACAAGAGGCAAACACTAGCAAGATTGTGGGAACATATGGTTATGTTCCTCCTGAATACGTTAAACAAGGTGTGTACTCTACAAAATCTGATGTCTACAGTTTTGGAGTCCTACTTCTACAAATTATAAGTGGCAAGAAGACTGGTGGCTTTTATGGAGAGAACGAAGATTTAAAGCTCTTGGAATATGCTTATGAGTTATGGAAAGAAGGAGAGGGTATGGAGTTGATGGATGATTCACTTGATGATACATCTTCACCGTGCAAACTAATGAGATGCATGCAAATTGCTTTGTTATGCGTCCAAGAACATGCAAATGATAGGCCTTCCATGCTGGAAGTTTCTTCAATGTTGAGAAGCGAAAATAAATCTCTTGCGGCCCCCAAAAGGCCAGCATTTTCAAAAGTGAAAGACGAGGAAGAAGTAAAGGAGTGTCAACCTCTTGAAATTATTTCAGTCAACAACGTAACAATCACTGAAATGGTGGGCAGATAG 2319 0.42 MSFRMVLVLSLHVFICALMFQSSEATVQSWFKIGYWYNGSEFPVSDINSAFYTHLICAFADVNTSSFEISVSSSNQQSFSTFTNTVKLKNPSITTLLSTGGDQNSVAIKSMLSNTSSRKPFIQSSIRLARLYGFQGLDLSWSTIETSSDADNLGQLFREWRVAAKSEAEANSTLPELILTAAVQASPDLVNGSYPVDSIRSNLNWIHVNTYSYHTPTRQNFTAAPSALYDPGSNHISTDYYIKAWLGKELAANMLILGLPFFGFEWTLQNPSNNKIGALATGPAGAADDGSISYKDIKNVIQQNGAAVLYNDTYVTNYCSFDSTWIGFDDVEVVQKKVSYAREKGLLGYYVWQISHDDDNWTLSRAAAEQVDDDKQKRWKLLVIILSIIATVILMLGVTICFQRNRIFKSTGTLNAVKHARPRVNNKEAAGPFHGDAPDLHVYRFSDIEAATNEFSYENKLGQGGYGPVYKGILPDGQEIAVKKLSKASTQGFEEFKNEVTLTARLQHVNLVQLLGFCIERGEQMLVYEYMANKSLDFYLFDPIRRLLLDWNKRVGIIDGITQGLLYLQEYSRFTIIHRDLKASNILLDPEMKPKISDFGMARIFTKNEQEANTSKIVGTYGYVPPEYVKQGVYSTKSDVYSFGVLLLQIISGKKTGGFYGENEDLKLLEYAYELWKEGEGMELMDDSLDDTSSPCKLMRCMQIALLCVQEHANDRPSMLEVSSMLRSENKSLAAPKRPAFSKVKDEEEVKECQPLEIISVNNVTITEMVGR 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0902 772 Gene3D - 261 328 IPR029070 -
Ssu6g0902 772 Gene3D Phosphorylase Kinase; domain 1 417 530 - -
Ssu6g0902 772 SUPERFAMILY Protein kinase-like (PK-like) 439 752 IPR011009 -
Ssu6g0902 772 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 19 24 767 - -
Ssu6g0902 772 Gene3D Transferase(Phosphotransferase) domain 1 531 749 - -
Ssu6g0902 772 SMART serkin_6 455 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0902 772 Pfam Glycosyl hydrolases family 18 33 357 IPR001223 GO:0005975
Ssu6g0902 772 SUPERFAMILY (Trans)glycosidases 32 371 IPR017853 -
Ssu6g0902 772 CDD STKc_IRAK 461 726 - -
Ssu6g0902 772 SMART 2g34 30 357 IPR011583 GO:0008061
Ssu6g0902 772 Pfam Protein tyrosine and serine/threonine kinase 457 725 IPR001245 GO:0004672|GO:0006468
Ssu6g0902 772 ProSitePatterns Serine/Threonine protein kinases active-site signature. 576 588 IPR008271 GO:0004672|GO:0006468
Ssu6g0902 772 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 30 374 IPR001223 GO:0005975
Ssu6g0902 772 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 24 767 - -
Ssu6g0902 772 Gene3D Glycosidases 44 358 - -
Ssu6g0902 772 ProSiteProfiles Protein kinase domain profile. 455 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0902 772 SUPERFAMILY Chitinase insertion domain 262 328 IPR029070 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0902 Ssu-Chr6 14611892 14621408 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0902 371 741 Receptor kinase-like Gene Family AT4G05200 48.549 2.60e-112 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu6g0902 Glyco_hydro_18 1.2e-62 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0902 - - vun:114175226 1162.9