Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0897 ATGGTGCTGGGAGACCGTTTTCCGGTGGGTATGCGTGTACTTGCCGTTGACGACGACCAAACGTGTCTCAAAGTGTTGGAGAACCTGCTTCGCAAATGCCAGTATAATGTTACTACAACTACTCAGTCAATTAAGGCGCTAGAAATGTTGAGGAAAAACAGAAATAAGTTTGACCTTGTTATTAGTGATGTAAATATGCCAGACATGGATGGGTTTAAGCTGCTTGAGCTAGTGGGACTTGAAATGGACCTACCTGTTATCATGTTGTCAGGATACGGTGATAAAGAGCGGGTGATGAAAGGTGTTATACATGGCGCTTGTGACTATTTAATGAAACCGGTTCGAATTGAAGAGTTACAGAACATATGGCAGCATGTAGTGCGAAGGAAGATTGATGGCAAGGACAAGAATAAGACTGCAAGTGAGGAGAAAGCCTGCAATATGGCTGGGGAATGTAGTCAAGCCATGGcatcaaaaaataatgttgaccAGAATAAAAAACTGGGGCAGAAAAGGAAGGAACAAAGTGAGGCTGAGGAAGACGAAGAAGATGATCAAGAGAATGAGGAACCCTCAAATCAGAAGAAGCCTCGTTTAGTTTGGGATGCCGAGTTGCATTGCAAATTTCTTGCTGCCATTAATCAACTGGGAATTGACAAGGCTTTCCCCAAGAGAATACTTGACTTGATGAATGTTGAAGGGCTCACAAGGGAAAACGTAGCAAGCCATCTGCAGAAATACAGACTCGGTCTCAGAAAGCCTACTCAACAGGCTAGCATGGTTGCTACATTGGGTAGTAGTGATCCTTATCTGCAGATGGGTTCAATAGAAGGCTTTCGCAATTCGTCTGGATCAGCAGGAATGTTAAGTGCCACACTACCATCATATGCATCAGGTGGAATGTTTTGTAGGCTAAACTCCCCATCTGGCTTGAACATGAGTGGAATTAACTCTTCTGCACTAGTTGGGCCTGTTCAGTCCCAAAACATTAACAGAAGCTCCATCAAACCACTTGGAAACATGCAGCTGCCCATGTTTTCTGCAAATCAAACCTCAAGTTTATTACAGGGCATTCCAACACCAATTGAGGCTAACCCATTTCAGCAGAACAACTGTCCAGCTGGTATTAGGAAGTTGAGTCCACTTGATGATTCAAGTGGATTTAAACTTCCCTCTGGTTTCTCAAATAGTAAAGCTACTATTAGAAATGCAAATAATTCTCTACCTGCTCTCTCAAATAATCATTTACTATTACAAGGGAATTCCCCACCGACACATAATTCAGGAGCATTCAGAAAGCACTCTTCCCTTGGAGCTGCTTCCGTGAACACACAATCTTTTGACCCTGGCATCTGTGGTTCCTCTACCATGTTGGATTATAATCGGCATAATAAAAGCTGGCAGGGAGCAGCTCAGATATCTAACTTTCCTGCCAATACTTTTGCAGTCAGTAAGGTTTTCAATAATGATCAACTGCCTCAAAATAACTCAAACTTTTCCTCACCCACTTTTTGCAGCGGGAACAGTCCAGTTGATTTTTCTTCCACAAATGCTATTGCTGTTCCCTTGGAGGATGCTAGAAGTGAGCTGCAATGCCAAGAAGGCTTACTCGGGAATATCTTCCTGGCTTCATGTTACACCCAGCATCAAAGCTGGGAAGCAGATAAGGAGGGTTGCAACAAAGACATGAGTCAAACCTTCAATTCCATAAATTCTATCATTTCTCCTAATGGAGACACTAGTTCCTTGGGGCATaatttagacaaaaataatacaGTTTGCAGCAACAGAATTGATGCATCTTTGGTTGGCCAATTGAATGGGGTTAATCCATCAATCACACAGTCCAGTGAAGGTGAGAAATTCTATTCAATGAAGTCAAATGATGCCTGCAATTTGCAGAGCATGAAGTCCCAAGAAGAAGGACTCATTCAGAATAGTAGTTTTGGGTCCTTGGATGACATAATGAGTGAAATAGCCAAACAGGAGCAAAATGCGATTATGTTGATGGATGGAGAAATGGAGTTTGATGCTTACCATGTTGGATCAAGCATTTGA 2058 0.4184 MVLGDRFPVGMRVLAVDDDQTCLKVLENLLRKCQYNVTTTTQSIKALEMLRKNRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSGYGDKERVMKGVIHGACDYLMKPVRIEELQNIWQHVVRRKIDGKDKNKTASEEKACNMAGECSQAMASKNNVDQNKKLGQKRKEQSEAEEDEEDDQENEEPSNQKKPRLVWDAELHCKFLAAINQLGIDKAFPKRILDLMNVEGLTRENVASHLQKYRLGLRKPTQQASMVATLGSSDPYLQMGSIEGFRNSSGSAGMLSATLPSYASGGMFCRLNSPSGLNMSGINSSALVGPVQSQNINRSSIKPLGNMQLPMFSANQTSSLLQGIPTPIEANPFQQNNCPAGIRKLSPLDDSSGFKLPSGFSNSKATIRNANNSLPALSNNHLLLQGNSPPTHNSGAFRKHSSLGAASVNTQSFDPGICGSSTMLDYNRHNKSWQGAAQISNFPANTFAVSKVFNNDQLPQNNSNFSSPTFCSGNSPVDFSSTNAIAVPLEDARSELQCQEGLLGNIFLASCYTQHQSWEADKEGCNKDMSQTFNSINSIISPNGDTSSLGHNLDKNNTVCSNRIDASLVGQLNGVNPSITQSSEGEKFYSMKSNDACNLQSMKSQEEGLIQNSSFGSLDDIMSEIAKQEQNAIMLMDGEMEFDAYHVGSSI 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0897 685 SMART REC_2 11 123 IPR001789 GO:0000160
Ssu6g0897 685 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 196 249 IPR006447 GO:0003677
Ssu6g0897 685 SUPERFAMILY Homeodomain-like 194 253 IPR009057 -
Ssu6g0897 685 Gene3D - 192 253 - -
Ssu6g0897 685 SUPERFAMILY CheY-like 10 130 IPR011006 -
Ssu6g0897 685 CDD REC_typeB_ARR-like 13 127 - -
Ssu6g0897 685 Pfam Response regulator receiver domain 13 121 IPR001789 GO:0000160
Ssu6g0897 685 MobiDBLite consensus disorder prediction 157 197 - -
Ssu6g0897 685 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 666 IPR045279 GO:0009736
Ssu6g0897 685 Gene3D - 10 147 - -
Ssu6g0897 685 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 193 252 IPR017930 -
Ssu6g0897 685 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 666 - -
Ssu6g0897 685 PIRSF RR_ARR_type-B 2 683 IPR017053 GO:0003677|GO:0003700|GO:0009736
Ssu6g0897 685 ProSiteProfiles Response regulatory domain profile. 12 127 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0897 Ssu-Chr6 14511524 14514808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0897 5 371 Response Regulator Gene Family AT2G25180 51.206 8.49e-113 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu6g0897 Response_reg 1.4e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0897 K14491 - gmx:100803040 1045.03