Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0884 ATGCAACCTTGTAGCGGAGAAATGCAAGGCCCTAACTCTAACTCCCTCTTCAACAGCAACGGTAATCAGCCGCAGATCCAGTTCGACCCCACTTCCAACGACGATTTCCTCAAGCAAATGCTCTACAACCTCCCTTCCTCCTCCTGGACCCTCGACCCCAAGCCCAACCCCTTGTGGGACCCCAATTCCGACGAAACGACGCCCGATAATGTCGTTTTCCCCTACGACGCCGAACACGCCAACTTGGCCTCCAAGTTTCGAAACCACCAGATCAGCGACGACGACAAGGCCTCCGCTCTCATgctccaccaccacctcctcctctcctcctcctccgccgccgccaACTCCCCCCTCctccacaaccacaaccacaaccacaacgtGCCCTTGTCGTTTGACCCCTCGCGAAACGACGCCCCCTCCTTCAAATCTCCCACTCCCACCGGTGAGGCTTCCGTTCAAGCTCTCTACAACGGCTTCTCCGGATCTCTCCAAGGAACCGCCCGACCCTCCAACCAAACTCACCATTTTCAACATCCTCagGGGCAGAGCTTTGGAGCTTCGGCTCCggctagtggtggtggtggtggtgcttcGGGTCAGCCGAAGCAGAGGGTCAGGGCCAGGAGGGGACAAGCCACGGACCCACACAGCATCGCCGAAAGGTTACGGAGGGAGAGAATCGCAGAGAGAATGAAGGCACTGCAAGAACTGGTTCCCAATGCCAACAAGACTGACAAGACCTCCATGCTGGATGAGATCATCGATTATGTGAAGTTCCTACAGCTCCAAGTAAAGGTTTTAAGCATGAGCCGATTAGGCGGTGCAGCGGCCGTCGCTCCCCTTGTTGCTGATATGTCCTCTGAGGGAAGCGGTGACTGCATTCAAGCCAAAGCCAACGCCGCCAACAGTAACTCAAACGGCAACCAAACGTCCTCAAACGACAGCCTCGCCATGACGGAGCAACAAGTGGCCAAACTCATGGAGGAAGACATGGGGTCCGCCATGCAGTACCTTCAGGGCAAGGGTCTCTGCCTCATGCCCATTTCTCTCGCCACTGCCATCTCCAAAGCCACGTGTCACACGAGAAACCCCTTCATCAGCAACTATATCAACGGTGATGGGCCCTCCTCTCCCGGAATGTCCGCGCTGACTGTGCAGTCTGCTACTGTGGGTAACGGCGTCGTCAAAGACGCGGCATCCGTTTCCAAGTCATGA 1221 0.5143 MQPCSGEMQGPNSNSLFNSNGNQPQIQFDPTSNDDFLKQMLYNLPSSSWTLDPKPNPLWDPNSDETTPDNVVFPYDAEHANLASKFRNHQISDDDKASALMLHHHLLLSSSSAAANSPLLHNHNHNHNVPLSFDPSRNDAPSFKSPTPTGEASVQALYNGFSGSLQGTARPSNQTHHFQHPQGQSFGASAPASGGGGGASGQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKTSMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGSGDCIQAKANAANSNSNGNQTSSNDSLAMTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISKATCHTRNPFISNYINGDGPSSPGMSALTVQSATVGNGVVKDAASVSKS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0884 406 Pfam Helix-loop-helix DNA-binding domain 218 263 IPR011598 GO:0046983
Ssu6g0884 406 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 213 262 IPR011598 GO:0046983
Ssu6g0884 406 MobiDBLite consensus disorder prediction 47 67 - -
Ssu6g0884 406 MobiDBLite consensus disorder prediction 118 219 - -
Ssu6g0884 406 MobiDBLite consensus disorder prediction 1 32 - -
Ssu6g0884 406 SMART finulus 219 268 IPR011598 GO:0046983
Ssu6g0884 406 PANTHER TRANSCRIPTION FACTOR BHLH69 25 370 - -
Ssu6g0884 406 MobiDBLite consensus disorder prediction 118 189 - -
Ssu6g0884 406 Gene3D - 210 278 IPR036638 GO:0046983
Ssu6g0884 406 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 211 273 IPR036638 GO:0046983
Ssu6g0884 406 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 25 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0884 Ssu-Chr6 14395704 14399576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0884 192 406 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 63.983 1.05e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu6g0884 HLH 9.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0884 - - pvu:PHAVU_003G157100g 516.153