Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0881 ATGGGTGAGAATTGGAAAGGCAATAGCGAGGGACAGTCGACGACGTTGGTGCAGGGGAAGTACGAGCTGGGTCGGGTGCTGGGGCACGGGACATTCGCGAAGGTGTACCACGCGCGGAACCTTCAGACGGGGCAGCACGTGGCGATGAAGGTGGTGGGGAAGGAGAAGGTGATAAAGGTGGGGATGATGGAGCAGATCAAGAGGGAGATCTCGGTGATGAAGAAGGTGAAGCACCCCAACATCGTGGAGCTCCACGAGGTCATGGCGAGCAGGTCCAAGATCTACATCGCCATGGAGCTCGTCCGCGGCGGGGAGCTCTTCAACAAGGTCTCCAAGGGCCGCCTCAAGGACGACGTCGCCCGACTCTACTTCCAGCAGCTGATCTCCGCCGTCGACTTCTGCCACAGCCGCGGCGTCTACCACCGCGACCTCAAGCCGGAGAACCTCCTCCTCGACGACCGCGGCAACCTCAAGGTCTCCGACTTCGGCCTCACCGCCTTCTCCGACCACCTCGGCCAGGACGGGCTGCTGCACACCACGTGCGGCACGCCCGCCTACGTGTCGCCCGAGGTCATCGCGAAGAAAGGCTACGACGGTGCCAAGGCCGATATATGGTCGTGCGGGGTCATTCTCTACGTGCTCCTCGCGGGGTTCTTGCCCTTCCAGGACGACAATTTGGTGGCCATGTATAAGAAGATTTACAAGGGAGACTTCAGGTGTCCGCCGTGGTTTTCTCTGGAGGCGCGGAGGCTCGTCACGAAACTCCTCGACCCGAATCCGAATACTCGGATTGGTATCTCGAAGGTGATGGAGTCTTCTTGGTTTAGGAAACCGGTTCCGAGGaaggtggaggaggaggtggtggtggtggaggaagAGGAGGCCGAGAAGTGCGAGAGGCCCGCGACGATGAACGCGTTTCACATAATCTCGTTGTCGGAGGGGTTCGATTTGTCGCCGCTGTTTGAGGAGAAGAAGAGGGAGGAGATGCGGTTCGCCACCGCGGGCACGCCGAGCAGTGTGATATCGCGGCTGGAGGAGGTGGCCAAGGCCGGCAAGTTCGACGTGAAGAGCAGCGAGACCACGGTGAGGCTTCAGGGGCAGGAGCGTGGGAGGAAGGGGAAGCTCGCGATTGCGGCGGATATTTACGCCGTGACGCCGTCGTTTATGGTGGTGGAGGTCAAGAAGGACCACGGGGATACCTTGGAGTACGACCAGTTCTGCAGTAAACAACTTCGTCCTGCGCTCAAGGATATTTTCTGGAATTCGCCTCAGAATCCCACACCTGCTATGCTAGTGCTTGAATGA 1308 0.5795 MGENWKGNSEGQSTTLVQGKYELGRVLGHGTFAKVYHARNLQTGQHVAMKVVGKEKVIKVGMMEQIKREISVMKKVKHPNIVELHEVMASRSKIYIAMELVRGGELFNKVSKGRLKDDVARLYFQQLISAVDFCHSRGVYHRDLKPENLLLDDRGNLKVSDFGLTAFSDHLGQDGLLHTTCGTPAYVSPEVIAKKGYDGAKADIWSCGVILYVLLAGFLPFQDDNLVAMYKKIYKGDFRCPPWFSLEARRLVTKLLDPNPNTRIGISKVMESSWFRKPVPRKVEEEVVVVEEEEAEKCERPATMNAFHIISLSEGFDLSPLFEEKKREEMRFATAGTPSSVISRLEEVAKAGKFDVKSSETTVRLQGQERGRKGKLAIAADIYAVTPSFMVVEVKKDHGDTLEYDQFCSKQLRPALKDIFWNSPQNPTPAMLVLE 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0881 435 Gene3D Phosphorylase Kinase; domain 1 18 102 - -
Ssu6g0881 435 PANTHER - 17 423 - -
Ssu6g0881 435 SUPERFAMILY Protein kinase-like (PK-like) 18 286 IPR011009 -
Ssu6g0881 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Ssu6g0881 435 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 6 17 423 - -
Ssu6g0881 435 Pfam NAF domain 301 357 IPR004041 GO:0007165
Ssu6g0881 435 Gene3D Transferase(Phosphotransferase) domain 1 103 279 - -
Ssu6g0881 435 Pfam Protein kinase domain 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0881 435 ProSiteProfiles Protein kinase domain profile. 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0881 435 CDD STKc_SnRK3 20 274 - -
Ssu6g0881 435 ProSiteProfiles NAF domain profile. 299 323 IPR018451 GO:0007165
Ssu6g0881 435 Gene3D Kinase associated domain 1, KA1 298 422 - -
Ssu6g0881 435 ProSitePatterns Protein kinases ATP-binding region signature. 27 54 IPR017441 GO:0005524
Ssu6g0881 435 SMART serkin_6 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0881 435 CDD CIPK_C 305 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0881 Ssu-Chr6 14316201 14317508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0881 7 430 CBL-interacting serine-threonine protein kinases AT4G30960 72.477 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu6g0881 Pkinase 3.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0881 - K07198 var:108321114 765.377