Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0877 ATGGCTATGCTCCGCAAATTGTTCTTCCGCAAACCTCCTGATGGCCTCCTCGAGATCTGCGAGAGAGTTTACGTTTTTGACTGCTGCTTCACCACGGATGCTTGGCATGAAGAGAATTACAAAGTGTACATGGACGGGATAGTTGGTCAACTTAGAGAGAACTTGCCTGATGCTTCAATTCTGATTTTCAATTTCCGCGAGGAGGATACGAAGAGTCAGATGGCAAATATAATGTCTGAGTATGACATTACTATCATGGACTATCCTCGGCACTACGAGGGTTGTCCCGTGCTCAAAATGGAGCTCATCCACCACTTTTTGAGGTCTGGTGAAAGCTGGCTCTCGCTCGGGCAGCATAATGTGTTGTTGATGCATTGTGAACGCGGTGGTTGGCCTGTTTTGGCTTTCATGTTGGCTGCATTGTTGATTTATAGGAAGGTTTATACTGGGGAGCAGAGGACTTTGGATATGGTTTACAGGCAGGCTCCACACGAGCTTTTGCATTTGTTGATGCCGATGAATCCGGTCCCTTCCCAACTGAGGTATCTGCAGTATGTTTCCAGGAGGAATGTGGCCTTAGATTGGCCTCCGCTGGACAGGGCCCTCATGTTGGACTGCATCATTCTTAGATTCTTCCCAAACTTTGATGGGGAAGGTGGTTGTCATCCCGTGTTTAGAATTTATGGACAGGAACCCTTTAGTGCtgataaaaatccaaaaatgttGTACTCTACACCAAAGAGAAGCAAAAATGTCCGGGCCTACAAGCAGGGAGAGTGTGaacttattaaaattgatattaattgcCATATTCAAGGTGATGTTGTCATTGAGAGCATTAACTTGAATGGTGACATGGAGCGTGAAATGATGATGTTCAGAGTCATGTTCAACACAGCTTTTGTTAGATCTAATATTTCGATGCTTAACCGGgatgaaattgacattttatgggATGCTAAAGATCACTTTCCAAAAGATTTTAGAGCCGAGATCCTTTTCTCAGAGATGGATGCTGCTGCAGCAGTTATTGCAGATGGTACCTCATGCTTTGAGGAGAAGGAAGGACTGCCAGTGGAAGCATTTGCCAAGGTTCAAGAGATCTTTAGCCATGTAGACTGGATGAACCCCAAAGATGCTGCATTAAATGTGCTCCAACAGATAAGTGCTTCAGCAATGAATGACAGGTTGGATACAGTTTCTGATCAGTATGTGGAAACTGGCACTTCATTGCATGAAACAGATCCTAGAACGCCTCAGCGGAATTTGAATGAAGTGATACATTCTTTATCCTCAGCAAAGAGATCCCCAGATAATGATATGAGTAGAAAAGAGGATAAGACGAACAAGGTTGAGGCTATTCCACAACAGCCTAGCACATCTAACATCATCTGTCAAGAGACAGCCAGATCTTCTGAAAGAACCTTGGAATCCAATAAATGTCCAACAGGACCTACAAATCGTGACATAAAACTGCAGGCATCTTATCCTGCCTTGTCTTGTTCTGTTGATACTTCTTTTTCCCCTCAAACACCTCCTTTGCGGCCTCAATCCACTAGTTGTGTTAAAGAAGTTCATGATTCTCCTCGCCAAACAGAATCACCCCCTCCTTATCTTTTGCCTTTGCAATCAAGACACCAATCACAAGACAGAAGTCATTCATCTATTTCTATCCCTACACCTGGGACCCAATTGTCATCTACTTTTCATTGTAAGTCACCAGCTGACACTGTTTCCCATCCTTCTGTTTCAGCGATTACTTCAACTCAACCATCTCCTTCACTTTCTTCCAAAAATGTGAATGAGATTCCTCCTATTAGAACAAGATTAGAGGCTTCCCCTTCACAACCTCCAACTCCACCACCTCCTCCTACCCCTCCGCTAAAGGATCATAGACTAGTTCGaactacacctccaccacctcctCCTACCGCTCCACTAAAGGATCACAGACTAGTTCGAGCTACACCGCCTCCACCTCCTCCAAATGAAGAACTACATGTTAAAGCCGGACCCCTTCCTTCTCCTCCATCTCCTATGAATGCGGAGCCACAGGTTAGAGGTGGACCCGCTCCTCCCCCTCCCCCTCCTCTAAAAGAGGAGCAACCTGTTAGCTTTAAGcctcctccacctccaccacctcctTGTCTCTCTGGGAAGGCTGCAGGTTCTACTATAGTACCAGTACCACCAGCACCACCTCCCCCACCACTTTCCTCAAATCACTCTAATTCTTCATTGCAAAAGTCTTCAGGTGCTCCTGCAGCACCTGCTGCTCCACCTCCTCCAATTCCCCCTGGTAAAGGAGGTCTAAAACCAGGCAGTGCTTTTCCATCGTCTCTTTCTGTGGGTGGTGATGGAACTAATGTGTTAGGCACAACAGGACCTCGATCTAGTTCGCCAACTAGCTCAAAGGGACGAATTCTATCACGTACAATTAGCTCAAAGAATAACACCAAAAAGTTGAAGCCATTGCATTGGTTGAAACTATCTAGAGCAGTGCAAGGAAGTTTGTGGGCTGAGACACAGAAATCTGGTGAAGCTTCCAAAGCCCCAGAGATTGATATGTCAGAGCTTGAGAGGCTCTTCTCAGCAGCAGTTCCAAGTTCAGGTCCTACCAAAAAGTCAAATGTCCAAAGCTCAGCTGGGCCTAAATCTGATAAAGTGCAACTGATTGAGCATAGGCGAGCATATAATTGTGAAATCATGCTTTCAAAAGTGAAAGTGCCGTTGCATGATTTAATGAGCTCAGTGCTAGCATTAGAAGAGTCAGCACTAGACACTGATCAGGTTGAGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAATTACTCAAGGGTTATAATGGAGAAAAGGAGAAGTTAGGGAGATGCGAACAGTTCTTAATGGAATTGATGAAAGTACCACGGGTGGAATCCAAGCTCAGAGTTTTTTCATTCAAGATTCAATTCCACTCTCAGgtTTCTGACCTTAGAAATAGCCTGAGTGTTGTGAATGCTGCTGCAGAAGAGATCAGGAATTCTGTCAAATTAAAGAGAATTATGCAAACAATACTTTCTCTAGGAAATGCTTTGAACCAAGGAACTGCCAGGGGTTCTGCTATTGGATTCAGATTGGATAGCCTTCTTAAACTCACTGAGACACGTGCACGGGACAAGAAGATGACTGTCATGCATTATCTTTGTAAGGTGCTAGCTGACAAACTACTGGAAGTTTTAGACTTTTCCAAGGATCTTGCTAACCTAGAGCCAGCAGCAAAGATCCAATTGAAGTTTTTGGCTGAGGAGATGCAAGCTATAAACAAAGGATTAGAAAAAGTGGTACAGGAACTATCAACCTCTGAAAATGATGGGCCTATATCAGAAACTTTCCGCAAGaGATTGAAAGAGTTCCTCTGTTCTGCTGAAGCTGAAGTCCGTTCATTGGCTTCACTATATTCTACTGTGGGTAGGAATGTGGATGCTTTGATTCTTTATTTTGGTGAAGATCCATCTCGTTGCCCATTTGAGCAAGTTGTGTCAACTTTGCTCAACTTTACTAGGATGTTCAACAAAGCCCATGAAGAAAACTGCAAGCAGCTAGAGCTTGAAATGAAGAAAACAGCAGAaagtgagaaaaagaaatgtgaATCAGAAAGAATTTTACCTACGGCTATCCGGACTGGCAATGTCTAA 3681 0.4265 MAMLRKLFFRKPPDGLLEICERVYVFDCCFTTDAWHEENYKVYMDGIVGQLRENLPDASILIFNFREEDTKSQMANIMSEYDITIMDYPRHYEGCPVLKMELIHHFLRSGESWLSLGQHNVLLMHCERGGWPVLAFMLAALLIYRKVYTGEQRTLDMVYRQAPHELLHLLMPMNPVPSQLRYLQYVSRRNVALDWPPLDRALMLDCIILRFFPNFDGEGGCHPVFRIYGQEPFSADKNPKMLYSTPKRSKNVRAYKQGECELIKIDINCHIQGDVVIESINLNGDMEREMMMFRVMFNTAFVRSNISMLNRDEIDILWDAKDHFPKDFRAEILFSEMDAAAAVIADGTSCFEEKEGLPVEAFAKVQEIFSHVDWMNPKDAALNVLQQISASAMNDRLDTVSDQYVETGTSLHETDPRTPQRNLNEVIHSLSSAKRSPDNDMSRKEDKTNKVEAIPQQPSTSNIICQETARSSERTLESNKCPTGPTNRDIKLQASYPALSCSVDTSFSPQTPPLRPQSTSCVKEVHDSPRQTESPPPYLLPLQSRHQSQDRSHSSISIPTPGTQLSSTFHCKSPADTVSHPSVSAITSTQPSPSLSSKNVNEIPPIRTRLEASPSQPPTPPPPPTPPLKDHRLVRTTPPPPPPTAPLKDHRLVRATPPPPPPNEELHVKAGPLPSPPSPMNAEPQVRGGPAPPPPPPLKEEQPVSFKPPPPPPPPCLSGKAAGSTIVPVPPAPPPPPLSSNHSNSSLQKSSGAPAAPAAPPPPIPPGKGGLKPGSAFPSSLSVGGDGTNVLGTTGPRSSSPTSSKGRILSRTISSKNNTKKLKPLHWLKLSRAVQGSLWAETQKSGEASKAPEIDMSELERLFSAAVPSSGPTKKSNVQSSAGPKSDKVQLIEHRRAYNCEIMLSKVKVPLHDLMSSVLALEESALDTDQVENLIKFCPTKEEMELLKGYNGEKEKLGRCEQFLMELMKVPRVESKLRVFSFKIQFHSQVSDLRNSLSVVNAAAEEIRNSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARDKKMTVMHYLCKVLADKLLEVLDFSKDLANLEPAAKIQLKFLAEEMQAINKGLEKVVQELSTSENDGPISETFRKRLKEFLCSAEAEVRSLASLYSTVGRNVDALILYFGEDPSRCPFEQVVSTLLNFTRMFNKAHEENCKQLELEMKKTAESEKKKCESERILPTAIRTGNV 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0877 1226 MobiDBLite consensus disorder prediction 614 718 - -
Ssu6g0877 1226 SMART PTEN_C2_2 197 336 IPR014020 -
Ssu6g0877 1226 MobiDBLite consensus disorder prediction 869 886 - -
Ssu6g0877 1226 Pfam Formin Homology 2 Domain 816 1185 IPR015425 -
Ssu6g0877 1226 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Ssu6g0877 1226 SUPERFAMILY Formin homology 2 domain (FH2 domain) 887 1205 - -
Ssu6g0877 1226 ProSiteProfiles Formin homology-2 (FH2) domain profile. 812 1211 IPR015425 -
Ssu6g0877 1226 ProSiteProfiles C2 tensin-type domain profile. 199 337 IPR014020 -
Ssu6g0877 1226 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 337 IPR035892 -
Ssu6g0877 1226 MobiDBLite consensus disorder prediction 755 769 - -
Ssu6g0877 1226 PANTHER FORMIN-J 1 1210 - -
Ssu6g0877 1226 MobiDBLite consensus disorder prediction 437 451 - -
Ssu6g0877 1226 MobiDBLite consensus disorder prediction 537 603 - -
Ssu6g0877 1226 MobiDBLite consensus disorder prediction 781 816 - -
Ssu6g0877 1226 Gene3D - 199 340 - -
Ssu6g0877 1226 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Ssu6g0877 1226 Gene3D Formin, FH2 domain 811 1196 IPR042201 -
Ssu6g0877 1226 MobiDBLite consensus disorder prediction 452 489 - -
Ssu6g0877 1226 SMART it6_source 812 1226 IPR015425 -
Ssu6g0877 1226 MobiDBLite consensus disorder prediction 865 887 - -
Ssu6g0877 1226 Gene3D Protein tyrosine phosphatase superfamily 15 198 IPR029021 -
Ssu6g0877 1226 Coils Coil 1186 1206 - -
Ssu6g0877 1226 MobiDBLite consensus disorder prediction 429 489 - -
Ssu6g0877 1226 MobiDBLite consensus disorder prediction 504 525 - -
Ssu6g0877 1226 Coils Coil 1092 1112 - -
Ssu6g0877 1226 MobiDBLite consensus disorder prediction 504 816 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0877 Ssu-Chr6 14257343 14266995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0877 794 1209 Protein tyrosine phosphatase (PTP) family AT5G58160 75.060 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0877 - - gmx:100786096 2017.66