Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0872 ATGTACGGTCGTATTTCAGATATTTCTGGGTTAAGGTCCATTGTGAGTCTCAACATATCAGGGAATTCGTTTCAGGGCTCTATTATGGATGTGTTTCAGGGCGGATTGGAGGTCCTGGACCTTAGCAGAAACCAATTTCAAGGTCACATTCCTCAGGTACAATACAACTTTAGTAGTTACAATTGGTCTCATTTAGTTTACCTGGATTTGTCAGAGAATAAGCTTAGTGggcaaatttttcaaaatttgaatgagTCCTTGAATCTAAAGCACCTTAATTTTGCCCATAATAGATTTGCCAGACAGAAATTCCCTCAAATTGAAATGCTCCTGAAATTGGAATATCTGAACTTGTCCAAAACTAGCCTTGTTGGTGAAATTCCTGATGAAATCTCACAACTGAGTAATTTGAGTGCACTTGCTCTTTCTATGAATCATCTTAGTGGGAAAATTCCCTTACTGAGGAATGAACACCTCCAAGTCCTTGACCTTTCAAACAACAATTTGAGTGGAGCAGTCCCTCCATCTGTCTTGGAGAAACTTCCATGGATGGAGAAATACAACTTCTCTTATAATAACTTAACCCTTTGTGTTTCTGAAATCAAACCTGAGATCCTGCAAACAGCATTCTTTGGATCATTGAATAGTTGCCCAATAGCTGCAAACCCGCGACTTTTCAAAAGAAGAGACACTGGACCCAACGGAATGAAGCTAGCCTTGGCATTGACCTTCTCAATGGTCTTTGTGCTTACTGGGCTTTTGTTTCTAGCATTTGGTTGcagaaggaaaacaaaaatgtgGGAATTCAAGCAAACTTCATACAAAGAAGAACAAAACATTTCAGGTCCCTTCTCATTCCAGACTGATTCGACAACTTGGGTGGCTGATGTTAAGCAAGCAACATCAGTCCCAGTAGTAATCTTTGAGAAGCCATTGTTGAATATCACATTTGCAGACCTCTTGGCTGCAACTTCAAATTTTGATAGGGGCACCCTTTTGGCTGAAGGAAAATTTGGGCCAGTCTATAGAGGCTTTCTGCCTGGTGGCATTCATGTGGCAGTTAAGGTTTTGGTTGTTGGTTCTACATTGACTGATGAAGAGGCTGCAAGAGAGCTAGAATTTCTTGGTAGAATCAAGCACCCTAATCTTGTTCCCTTAACTGGATATTGTGTAGCTGGGGATCAGAGAATTGCCATATATGATTACATGGAGAATGGTAACTTGCAAAACCTGCTCTATGACTTGCCACTTGGGGTACAAAGCACAGATGATTGGAGCACAGACACATGGGAAGAAGCTGACAATAATGGCATTCAAAATGCTGGCTATGAAGGGTTCCTAACATCTTGGAGATTTCGCCACAAAATAGCCCTTGGCACGGCCCGAGCATTGGCATTTTTGCATCATGGTTGCTCACCTCCAATTATTCACAGAGAAGTTAAGGCTAGCAGCGTTTATTTGGACTATGACTTGGAGCCAAGGTTGTCTGATTTTGGGTTGGCCAAGATTTTTGGAAGTGGTTTGGATGATGAAATTGCGCGTGGCTCACCCGGTTATGTTCCACCAGAGTTTTCTCAACCAGAATTTGACACCCCAACACCAAAATCTGATGTGTACTGTTTTGGGGTGGTTCTCTTTGAGCTAGTAACTGGAAAGAAGCCAGTTGGAGATGATTACCCTGATGATAAAGAAGCAACTTTGGTAAGTTGGGTCAGAGGGCTTGTAAAAAGGAACCAAGGTTCAAGGGCTATTGATCCAAAAATTCGTGACACAGGACCAGATGAACAAATGGAAGAGGCTCTTAAGATTGGTTATCTGTGCACTGCTGACCTTCCCTACAAGCGACCAAGCATGCAACAGATAGTTGGACTTCTAAAGGATATTGAACCTACTGCAAATTAG 1902 0.4111 MYGRISDISGLRSIVSLNISGNSFQGSIMDVFQGGLEVLDLSRNQFQGHIPQVQYNFSSYNWSHLVYLDLSENKLSGQIFQNLNESLNLKHLNFAHNRFARQKFPQIEMLLKLEYLNLSKTSLVGEIPDEISQLSNLSALALSMNHLSGKIPLLRNEHLQVLDLSNNNLSGAVPPSVLEKLPWMEKYNFSYNNLTLCVSEIKPEILQTAFFGSLNSCPIAANPRLFKRRDTGPNGMKLALALTFSMVFVLTGLLFLAFGCRRKTKMWEFKQTSYKEEQNISGPFSFQTDSTTWVADVKQATSVPVVIFEKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDEEAARELEFLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVQSTDDWSTDTWEEADNNGIQNAGYEGFLTSWRFRHKIALGTARALAFLHHGCSPPIIHREVKASSVYLDYDLEPRLSDFGLAKIFGSGLDDEIARGSPGYVPPEFSQPEFDTPTPKSDVYCFGVVLFELVTGKKPVGDDYPDDKEATLVSWVRGLVKRNQGSRAIDPKIRDTGPDEQMEEALKIGYLCTADLPYKRPSMQQIVGLLKDIEPTAN 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0872 633 Gene3D Transferase(Phosphotransferase) domain 1 403 633 - -
Ssu6g0872 633 PANTHER CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED 2 630 - -
Ssu6g0872 633 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 630 - -
Ssu6g0872 633 Gene3D Phosphorylase Kinase; domain 1 287 402 - -
Ssu6g0872 633 Pfam Protein tyrosine and serine/threonine kinase 331 623 IPR001245 GO:0004672|GO:0006468
Ssu6g0872 633 Gene3D Ribonuclease Inhibitor 2 217 IPR032675 -
Ssu6g0872 633 SUPERFAMILY L domain-like 7 197 - -
Ssu6g0872 633 Pfam Leucine Rich Repeat 158 176 IPR001611 GO:0005515
Ssu6g0872 633 ProSiteProfiles Protein kinase domain profile. 327 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0872 633 SUPERFAMILY Protein kinase-like (PK-like) 312 625 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0872 Ssu-Chr6 14175055 14176956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0872 6 628 Receptor kinase-like Gene Family AT5G07280 32.911 1.47e-89 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Ssu6g0872 PK_Tyr_Ser-Thr 2.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0872 - - gmx:100797738 1179.85