Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0871 ATGTCGGACGAAGAGCACCATTTCGATTCTCACGCGGATGCGGGAGCGTCCAAGACGTATCCTCAGCAGGCTGGTACCATTCGCAAGAATGGCTACATCGTCATTAAATCCAGGCCTTGCaagGTTGTAGAAGTTTCTACATCAAAAACAGGCAAGCATGGACATGCAAAGTGCCACTTTGTtgcaattgatatttttaatggGAAAAAACTTGAAGATATCGTTCCATCATCCCACAACTGTGATGTTCCACATGTGAATCGCACTGACTATCAGCTGATTGATATATCTGAAGATGGCTTTGTGAGTCTGTTGACTGAGAACGGAAATACCAAGGATGATCTGAGGCTTCCCACTGATGAGTCGCTGCTTGCTCAGattaaagATGGATTTGTTGAAGGAAAAGATCTTGTGGTTTCTGTCATGTCTGCAATGGGAGAAGAACAGATCTGTGCCCTGAAGGACATCGgtcccaaaaattaa 483 0.4182 MSDEEHHFDSHADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDESLLAQIKDGFVEGKDLVVSVMSAMGEEQICALKDIGPKN 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0871 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Ssu6g0871 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Ssu6g0871 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Ssu6g0871 160 CDD S1_eIF5A 86 156 - -
Ssu6g0871 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Ssu6g0871 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Ssu6g0871 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Ssu6g0871 160 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Ssu6g0871 160 MobiDBLite consensus disorder prediction 1 21 - -
Ssu6g0871 160 Gene3D - 86 159 IPR012340 -
Ssu6g0871 160 Gene3D - 1 85 IPR014722 -
Ssu6g0871 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Ssu6g0871 160 TIGRFAM eIF_5A: translation elongation factor IF5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0871 Ssu-Chr6 14149804 14152500 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0871 1 159 Eukaryotic Initiation Factors Gene Family AT1G13950 88.679 8.07e-103 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0871 K03263 - gmx:100305510 317.005