Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0870 ATGGCTCAGCGCCGCAGCTCCAAACCTCTCCCAGAGCCAGACCCCAAAGGAAACGATTCTGACGAAAAACCGCAACGCACCAAGCAAACAGGACGAGTAGCTGAATCGCCCTCCGCCGCCGAGTCGCAGCACGGCGAGTTACGGAGTTCCGGCGAGCCCCGTACGGAGTCCAATTTAGAAACCCTAGGCGGTGTTCCCTCCTCGGTTGACACCCTTGGTGTGCAGCATCGGAGTGACGATTTGCAAGGGAGCTCTACTGCGCCGAATTCGGGTGGTCAAGCCGAAAGTAAGGAGACAGTTGGACCTCCTGAAAAGGAAATTATTGAAAGAGGAGCTGCCCAGCCACTTCAAACTCAGACAGAAAATTGGGTGCAGGCGTCTGTGTCATCAACTCCATTGTCTGAACTATCGCCAACTTCTGTTACACAATCTTTATCATCTGTTTCTAGTCCAACTGTACGAAAACAGAAAATATCTACTCCAAAGGTCAATAACGTGCATGTGCCAGAAGTAGATAAAAAGAATCCTTCTGGCGGCAAAACCTTACCTGCTGTTTCTGTTGCAAGGACATCAGCATCTGATGGATACAACTGGCGGAAGTATGGTCAGAAGCAAGTGAAGAGTCCTACAGGTTCTCGAAGCTATTACAGGTGTACTCATTCAGACTGTTGCGCTAAGAAGATTGAATGCTGTGATCATTTAGGTCATGTGATAGAGATTGTTTATAAAAGTGAGCACAATCATGATCCCCCATGGAAAATTAATTCCATTAGGGAAAGTAAGTTTCTGTCTTCCAGCGAACCTGTTGTAGAAAACAGTGTTCCAGAGCAGCCTGTCAGAGTTCCAAAGTATCCTGATCCATCCATTTCTTCAAAAGAACTTCTACAAGAAGCACCCTGCAGCACTGATAAGAAACGACAAAACTCGTCTAATATCAGTGGTAATGGTGAAGTTATTTTGAAAGAGGAACATGTAAATGAGCCAGAGCCAAAAAAAAGAATGAAGAAAGGTGACTTAACAGACATGGATTCTCCCGTAAAACCTGGAAAGAAGCCCAAGTTTGTCGTACATGCAGCAGGGGATGTGGGGATATCTGGCGATGGCTACCGATGGCGCAAGTATGGGCAGAAAATGGTGAAGGGAAATCCACATCCCAGGAACTACTACAGATGCACTTCTGCTGGATGTCCTGTCAGAAAGCACATTGAGACTGCTGTAGATAACTCAGATGCCGTCATCATAACATACAAGGGTGTACATGACCATGACATGCCTGTGCCCAAGAAACGACATGGCCCACCAAGTGCTCCTCTTGTTGCTGCTGCAGCACCTGCCTCCATGAACAGTTTGCAGGTGAAGAAACCCGATTCCccacaaaacaagaaaatttctACTCAATGGTCGGTGGACACCGAAGGAGAACTAACTGGGGAAGCCCTGGAACTTGGGGGTGAGAAAGCAATGGAGTCGGCTCGAACGCTTCTGAGCataggttttgaaattaaaccTTGCTGA 1515 0.4647 MAQRRSSKPLPEPDPKGNDSDEKPQRTKQTGRVAESPSAAESQHGELRSSGEPRTESNLETLGGVPSSVDTLGVQHRSDDLQGSSTAPNSGGQAESKETVGPPEKEIIERGAAQPLQTQTENWVQASVSSTPLSELSPTSVTQSLSSVSSPTVRKQKISTPKVNNVHVPEVDKKNPSGGKTLPAVSVARTSASDGYNWRKYGQKQVKSPTGSRSYYRCTHSDCCAKKIECCDHLGHVIEIVYKSEHNHDPPWKINSIRESKFLSSSEPVVENSVPEQPVRVPKYPDPSISSKELLQEAPCSTDKKRQNSSNISGNGEVILKEEHVNEPEPKKRMKKGDLTDMDSPVKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNSDAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMNSLQVKKPDSPQNKKISTQWSVDTEGELTGEALELGGEKAMESARTLLSIGFEIKPC 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0870 504 MobiDBLite consensus disorder prediction 113 159 - -
Ssu6g0870 504 MobiDBLite consensus disorder prediction 30 45 - -
Ssu6g0870 504 SMART WRKY_cls 192 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g0870 504 SMART WRKY_cls 365 424 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g0870 504 MobiDBLite consensus disorder prediction 320 350 - -
Ssu6g0870 504 ProSiteProfiles WRKY domain profile. 360 425 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g0870 504 SUPERFAMILY WRKY DNA-binding domain 361 425 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g0870 504 MobiDBLite consensus disorder prediction 71 96 - -
Ssu6g0870 504 ProSiteProfiles WRKY domain profile. 187 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g0870 504 MobiDBLite consensus disorder prediction 265 352 - -
Ssu6g0870 504 Pfam WRKY DNA -binding domain 194 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g0870 504 Pfam WRKY DNA -binding domain 367 422 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g0870 504 Gene3D WRKY domain 350 426 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g0870 504 Gene3D WRKY domain 182 251 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g0870 504 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 21 502 IPR044810 GO:0003700
Ssu6g0870 504 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 21 502 - -
Ssu6g0870 504 MobiDBLite consensus disorder prediction 1 159 - -
Ssu6g0870 504 MobiDBLite consensus disorder prediction 9 29 - -
Ssu6g0870 504 SUPERFAMILY WRKY DNA-binding domain 189 251 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g0870 504 MobiDBLite consensus disorder prediction 294 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0870 Ssu-Chr6 14100720 14107112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0870 127 504 WRKY Transcription Factor Family AT4G30935 57.441 4.31e-136 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu6g0870 WRKY 2.3e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0870 - - gmx:100127377 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0870 6 14100720 14107112 Ssu6g0870 6 14100720 14107112 ECH