Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0865 ATGGGTGGCCAGCGGGAAAATTTTTTGAGGTTGGATGCCTTGGATTCTAACCTATCTTCATCTTCTGATGCTGGAGTTATAAAATCTGGATTTAGTATTGATAAATTAAGCCATGGTGGTCATGGAAGCAGCACAACTTCTAGGTCTTTTAAAAGGGGAATGAGAAGGGGATCTGAAGGACTGAAGTCATTTGGGCGATCGCTTGGCTTGGGAGTATCTAGGGCAGTGTTCCCAGAAGATCTTAAAGTGTCAGAAAAGAAGATATTTGATCCTCAAGACAAATTTCTGCTCTTATGGAATAAACTTTTTGTTATCTCATGCATTTTGGCTGTGTCTGTGgatccactgtttttttatctCCCAGTCATTAATGATTCATTTCACTGTCTTGGCATAGACCGAAAGTTGGCAACAATAGTTACAACCTTAAGGACAGTGATTGATGCTTTCTATCTTATACACATGGCTCTCCAATTTCGTACTGCTTATATTGCTCCATCTTCTCGTGTCTTTGGGCGGGGTGAGCTTGTGATAGATTCAGCACAGATAGCCAAGCGATACTTGAGGCGGTATTTCATCATTGATTTCCTATCTGTGTTACCAATACCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTACTAGCAACAAAGCAGGCCTTGTTGTTCATTATCTTGCTTCAGTATGTTCCCAGATTTCTCCGAATGGTACCATTGACTTCAGAGCTTAAGAGAACAGCTGGTGTCTTTGCTGAAACTGCATGGGCAGGTGCTGCATATTATTTGCTGCTATACATGCTTGCCAGTCATATAGTTGGTGCTTTTTGGTACTTGTTAGCTATTGAACGCAATGACTCATGCTGGCAGAAAGCTTGCAGTGACAATGGGTGTGATAAAAATTTCCTATATTGTGGGAACCAGAACATGGTAGGTGATAGTGCTTGGAATAGTAAAAGTGGAGCTATTCTTCAGTCAAGGTGCTCTGCAGATGGTGATCCTCCACCTTTTGATTTTGGAATTTTCGGGCAAGTCTTGTCATCTGGCATCATTTCATCTAAGAAGTTCATCTCCAAATACTGTTACTGTTTGTGGTGGGGGCTCCAGAATTTGagTACACTTGGCCAGGGGCTTCAAACTAGCACCTATCCTGGGGAGGTTATCTTTTCAATAGCACTAGCTATATTTGGCCTCATCCTCTTTGCGCTTCTGATTGGCAACATGCAGACATATCTTCAGTCTCTCACCATTAGGCTCGAGGAAATGAGAGTCAAAAGGCGTGACTCAGAACAGTGGATGCATCATCGCCTACTCCCACAAGAGCTTAGAGAGCGTGTAAGACGGTATGACCAATATAAGTGGCTGGCAACGCGTGGTGTAGATGAAGAAAATTTAGTTCAGAGTCTACCAAAGGATCTTCAAAGAGATATTAAGCGTCATCTCTGTTTGGCCTTAGTGAGGAGGGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCAATATGTGAGAGACTGAAACCATGTTTATTTACTGAGAATACTTACATTGTTCGGGAAGGAGATCCAGTTGATGAGATGCTTTTCATCATACGTGGTCGCCTTGAGAGTGTTACCACAGATGGTGGGAGGAGTGGATTTTTCAACCGCAGTTTTCTAAAGGAAGCTGACTTCTGTGGGGAGGAGCTTTTAACCTGGGCCCTGGATCCCAAATCTGGTTCTAACCTCCCATCTTCTACTAGAACAGTTAAGGCATTAATGGAGGTTGAGGCTTTTGCCTTAACTGCTGATGAGTTAAAATTTGTTGCCAGTCAGTTTAGGCGCCTTCACAGTAGACAGGTTCAACACACTTTCCGTTTTTACTCCCAACAATGGAGGACCTGGGCTGCATGCTTTATTCAAGCAGCATGGCGTCGGtattctaaaaagaaaattatgaagcttcgtcaaaaggaagaagatggTGATGAGTCAGAAGGAACTCAGGAAAATGTTGGTGGCAGTTCCTACAGCTTTGGTGCTGCCTTGTTAGCCTCAAAGTTTGCCGCACACACTCTTCGTGGTGTGCATCGCAATCGACTAGCTAAGACTGCCAGGGAGTTGGTGAAACTACAGAAACCCCCTGAGCCTGACTTCTCTGCAGATGATGCAGACTAA 2172 0.4236 MGGQRENFLRLDALDSNLSSSSDAGVIKSGFSIDKLSHGGHGSSTTSRSFKRGMRRGSEGLKSFGRSLGLGVSRAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCILAVSVDPLFFYLPVINDSFHCLGIDRKLATIVTTLRTVIDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDSAQIAKRYLRRYFIIDFLSVLPIPQIVVWRFLQRSKGSDVLATKQALLFIILLQYVPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLAIERNDSCWQKACSDNGCDKNFLYCGNQNMVGDSAWNSKSGAILQSRCSADGDPPPFDFGIFGQVLSSGIISSKKFISKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLATRGVDEENLVQSLPKDLQRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALMEVEAFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKKKIMKLRQKEEDGDESEGTQENVGGSSYSFGAALLASKFAAHTLRGVHRNRLAKTARELVKLQKPPEPDFSADDAD 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0865 723 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 7 720 - -
Ssu6g0865 723 SMART cnmp_10 495 626 IPR000595 -
Ssu6g0865 723 Pfam Cyclic nucleotide-binding domain 516 606 IPR000595 -
Ssu6g0865 723 Pfam Ion transport protein 98 421 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Ssu6g0865 723 SUPERFAMILY Voltage-gated potassium channels 90 417 - -
Ssu6g0865 723 CDD CAP_ED 495 626 IPR000595 -
Ssu6g0865 723 Gene3D Helix hairpin bin 423 486 - -
Ssu6g0865 723 Gene3D Jelly Rolls 493 613 IPR014710 -
Ssu6g0865 723 Gene3D - 101 420 - -
Ssu6g0865 723 SUPERFAMILY cAMP-binding domain-like 424 615 IPR018490 -
Ssu6g0865 723 ProSiteProfiles cAMP/cGMP binding motif profile. 495 579 IPR000595 -
Ssu6g0865 723 PRINTS EAG/ELK/ERG potassium channel family signature 272 282 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu6g0865 723 PRINTS EAG/ELK/ERG potassium channel family signature 408 417 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu6g0865 723 PRINTS EAG/ELK/ERG potassium channel family signature 155 164 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu6g0865 723 PRINTS EAG/ELK/ERG potassium channel family signature 390 401 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu6g0865 723 PRINTS EAG/ELK/ERG potassium channel family signature 458 465 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu6g0865 723 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 720 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0865 Ssu-Chr6 14051922 14057736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0865 1 721 Ion Channels AT2G23980 76.495 0.0 1149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0865 K05391 - gmx:100784309 1302.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0865 6 14051922 14057736 Ssu6g0865 6 14051922 14057736 ECH