Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0861 ATGTATATGCATGGAACAGAGAAGCAAATATTCTCTTTCTTGAATCGCCTGCTGGTGTTGGCTTCTCATACACAAATACCAGCTCGGATCTCAAAACTTCAGGGGACAAAAGGACAGGATGCACTGATTTTTCTAATTAGATGGATGTCAAGATTCCCCCAATATAAATATAGGGAGTTTTACATTGCTGGGGAGAGCTATGCAGgGCATTACGTCCCCCAGTTGGCTAAGAAAATCCATGATTATAATAAGAAGtatccccaaattattaatctCAAAGGGTTCATTGTGGGAAATGCTGTGACTGATAGCTACAATGATGGGATTGGAACTGTCACTTACTGGTGGAGCCATTCTATGATATCTGATCAGTCATACAAATCTATCCTTAAATACTGCAATTTCACAGCAGAAGAAACATCTAAAAAATGTGATGATGCTTATAGTTATGCGGTTAACTATGAATTTGGAAATATAGACCAGTACAGCATCTATACCCCTACTTGCCCAACATCACAAAACAATACTGTCAGGCACATACGATTCAAGAATCTTCATATGATTTCAGGATATGATCCGTGTACTGAAAATTATGCAGAGAAATATTATAACCTTCCTGAAGTGCAGAAAGCAATGCATGCAAATGTTACCAACATTCCTTACAAATGGACTGCTTGCAGTGATGTGCTCCTAAAATATTGGAAGGATTCTGAAATTTCAGTGTTGCCCATATACAAAGAGTTAATTGCCGCGGGATTGAGAATATGGGTTTTCAGCGGGGACACAGATTCTGTGGTTCCAGTGACTGCCACAAGGTTTTCTCTCAACCACCTTAACCTCACCATCAGAACTAGTTGGTATCCGTGGTACTCTAGTGGACAgGTAGGTGGATGGACAGAGGTGTATAATGGACTAACTTTTGCAACAGTAAGAGGAGCCGGGCATGAAGTACCTTTGTTTCAGCCAAAGCGAGCTTACACCCTTTTCAAGTCCTTTTTGGCAGGAAAGGAGCTACCAAAATATTGA 1026 0.3967 MYMHGTEKQIFSFLNRLLVLASHTQIPARISKLQGTKGQDALIFLIRWMSRFPQYKYREFYIAGESYAGHYVPQLAKKIHDYNKKYPQIINLKGFIVGNAVTDSYNDGIGTVTYWWSHSMISDQSYKSILKYCNFTAEETSKKCDDAYSYAVNYEFGNIDQYSIYTPTCPTSQNNTVRHIRFKNLHMISGYDPCTENYAEKYYNLPEVQKAMHANVTNIPYKWTACSDVLLKYWKDSEISVLPIYKELIAAGLRIWVFSGDTDSVVPVTATRFSLNHLNLTIRTSWYPWYSSGQVGGWTEVYNGLTFATVRGAGHEVPLFQPKRAYTLFKSFLAGKELPKY 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0861 341 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 38 340 IPR001563 GO:0004185|GO:0006508
Ssu6g0861 341 ProSitePatterns Serine carboxypeptidases, serine active site. 62 69 IPR018202 GO:0004185
Ssu6g0861 341 ProSitePatterns Serine carboxypeptidases, histidine active site. 305 322 IPR033124 GO:0004185
Ssu6g0861 341 Pfam Serine carboxypeptidase 36 334 IPR001563 GO:0004185|GO:0006508
Ssu6g0861 341 Gene3D alpha/beta hydrolase 22 171 IPR029058 -
Ssu6g0861 341 PANTHER SERINE CARBOXYPEPTIDASE 24 38 340 - -
Ssu6g0861 341 PRINTS Carboxypeptidase C serine protease (S10) family signature 305 318 IPR001563 GO:0004185|GO:0006508
Ssu6g0861 341 PRINTS Carboxypeptidase C serine protease (S10) family signature 48 73 IPR001563 GO:0004185|GO:0006508
Ssu6g0861 341 Gene3D - 241 335 - -
Ssu6g0861 341 Gene3D - 194 231 - -
Ssu6g0861 341 SUPERFAMILY alpha/beta-Hydrolases 39 338 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0861 Ssu-Chr6 13995972 14000085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0861 199 338 Calmodulin-binding Proteins AT2G22960 30.496 1.53e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0861 K16297 - gmx:100785391 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0861 6 13995972 14000085 Ssu6g0861 6 13995972 14000085 ECH