Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0854 ATGCCGACGCGTTGTGAAATATGCTGCGAGATACTGATCGCGATCTTGCTCCCTCCACTGGGAGTTTGCTTTCGCCACGGTTGTTGCAGTGTTGAATTCGTAATCTGCGTGCTTCTCACTATTCTAGGTTATATTCCTGGCATAATTTACGCCCTCTATGCCATTATCTTCGTTGATCGTGATCAGTTCTTTGATGACTACAGGCGTCCTCTCTATGCACAATActga 228 0.4518 MPTRCEICCEILIAILLPPLGVCFRHGCCSVEFVICVLLTILGYIPGIIYALYAIIFVDRDQFFDDYRRPLYAQY 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0854 75 PANTHER BNAA03G50460D PROTEIN 1 73 - -
Ssu6g0854 75 Pfam Proteolipid membrane potential modulator 8 55 IPR000612 GO:0016021
Ssu6g0854 75 PANTHER HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED 1 73 IPR000612 GO:0016021
Ssu6g0854 75 ProSitePatterns Uncharacterized protein family UPF0057 signature. 12 27 IPR000612 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0854 Ssu-Chr6 13641646 13641943 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0854 1 74 RCI2 Gene Family AT4G28088 77.333 2.04e-39 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0854 - - gmx:100306426 135.961