Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0850 ATGCAGCAAAGTGATCAAACGGTGTTGAGCTTGAGGCCCGGTGGTGGAAGAGGCAGCAGGCTTCTCGGTCCTCGATTCGACTCGTCTTCATCGTCGTCTTCTGCTTCCCCTGCTTTTGGCTCCTTTTCCGCTGATCTTCCTCTTTTGCGCCCCCATGGCGCCGCTTCCTCCCCGTTCTCTATCAAGGCTGGAGATTCTCGGTTTGAGGGCCGGGAGCGTGTGCGTTATACCAGGGAGCAGCTTTTACAGCTTAGAGAgGGTGTTGAGATCCTTGATGATGTTTTAAAGATCAAACAAGATATTGAAGCTGAACTTTTTGGCGAAGATCAAAGTTGGGGCCGCTCAGAAAACAATCCCTCACATCAATTTCAAAACCGATATTCTGAGCCAGATAACCGTGACTGGCGTGGACGATCTGGGCAACTTTCTGGTAATGCTGATGAGAGGTCTTGGGATAATCTCAAGGAGAATAGGGAGTTTGGCAATACTAGTCAGATTAATCGTCAAGACCAATTGAATTCTCAGTTTGCAAGGGCACAAATCTCTTCTAACCAAGGGGGAGGACCTACTTCGACACTAATCAAGGCTGAGGTGCCATGGTCAGCTAGAAGGGAAAGTCTCTCTGAAAAGGATCGTGTCTTGAAGACAGTTAAaggAATACTAAATAAGTTGACTCCTGAGAAATTTGATCTCCTGAAGGGTCAGTTGATTGATGCTGGCATTACATCAGCTGACATATTGAagGGAGTTATTTCACTGATATTTGATAAGGCAGTGCTAGAGCCAACGTTTTGCCCCATGTATGCTCAGCTGTGTTCTGATCTTAATGAAAAGCTGCCTCCATTCCCATCTGATGAGCCTGATGGGAAAGAAATCACTTTTAAGCGAGTACTCTTGAATAACTGCCAGGAGGCTTTTGAAGGTGCAGATAAACTGAGGGAAGAAGTGAGACAGATGACTGCCCCTGAGCAGGAGATGGAGCGACGGGACAAGGATAGACTTGTGAAGATTCGAACCCTTGGAAACATCCGTTTAATTGGTGAGCTGTTGAAGCAAAGAATGGTTCCCGAAAAGATTGTTCATCACATTGTTCAGGAGCTTTTAGGACCTCCTGACAGCAAGGTCTGTCCAGCTGAGGAAAATGTTGAAGCCATATGTCAATTTTTCAACACTATTGGTAAGCAGCTTGATGAAAGCCCAAAATCACGGCGTATAAATGATATGTACTTTAGCCGGTTGAAAGAATTGAGCACCAACCCCCAACTTGCACCACGGATGCGGTTCATGGTTCGTGATGTTCTAGATTTGCGTGCTAATAACTGGATTCCAAGACGTGAAGAGGTGAAAGCGAAAACCATCACTGAAATTCATTCAGAGGCAGAAAAAAATCTTGGATTGCGTCCAGGTGCCACTGCGAGCATCAGAAATGCCCGTGGTGTAATTTCTGGTGTTCAAGGAAATACCAGTCCAGGGGGCTTCCCAATTGCCCGACCTGGTACAGGTGGTTTGATGCCTGGGATGCCGGGGACCAGGAGGATGCCTGGGATGCCTGGAATTGATAATGACAACTGGGAGATGCCTAAGACAAGATCAATGCCAAGAGGAGACATGTCAGGCATGCAAACTGGAGGACGTGGCCAGTCTCCTTTCCTTTCCAAGACATCAACTGTTAACACGAAGTTACTACCTCAAGGTAGTGGTGGCCTTATAAGCGGGAGAAGCAGTGCCCTGGTGCATGGGGGTGGTGCTCCATCTGCTCGTCCGTCAAACTTTGGTTTTGGTCCTGAGCCAACACCTCAAATCCCTTCACCTGTTAAACCTGTTTCTGCTGTATCCCCTGAGAAGCCACAAGCTCCAGCTGCAAAATTGAATACTGATGAACTTCACCGTAAAACTGTTTCTCTTCTGGAAGAATATTTCAGCGTTCGGCTTTTGGATGAGGCATTACAGTGTGTGGAGGAACTAAAAGCTCCAGCTTATTACCCTGAGGTTGTCAAGGAAGCCATTTCCCTTGCACTAGATAAAAGTCCACCATGTGTTGAACCTGTTGCTAAACTTCTTGAGTATCTGTTCATTAAGAAGATTATTTCAGCCAGAGACATAGGGACCGGGTGCATACTATTTGCTTCCCTGCTGGATGATATCGGCATAGATTTACCTAAAGCACCAAATAATTTTGGTGACATTATAGGGAAACTAGTTTTGGCTGGGGGTTTGGATTTTAAGGTGGTGAGAGAAATCCTTAAGAAGGTGGACGATGACCGGTTCCAGAAAGCAATATTTTTCTCTGCGATGCAGGTAGTTAGCTCCGCATCTGTGCAAGCTGTGTTGGATTCACAAGCATCTGATATTGAGGCCTGCCAAAATCTGTTCAAGTGA 2379 0.4615 MQQSDQTVLSLRPGGGRGSRLLGPRFDSSSSSSSASPAFGSFSADLPLLRPHGAASSPFSIKAGDSRFEGRERVRYTREQLLQLREGVEILDDVLKIKQDIEAELFGEDQSWGRSENNPSHQFQNRYSEPDNRDWRGRSGQLSGNADERSWDNLKENREFGNTSQINRQDQLNSQFARAQISSNQGGGPTSTLIKAEVPWSARRESLSEKDRVLKTVKGILNKLTPEKFDLLKGQLIDAGITSADILKGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEPDGKEITFKRVLLNNCQEAFEGADKLREEVRQMTAPEQEMERRDKDRLVKIRTLGNIRLIGELLKQRMVPEKIVHHIVQELLGPPDSKVCPAEENVEAICQFFNTIGKQLDESPKSRRINDMYFSRLKELSTNPQLAPRMRFMVRDVLDLRANNWIPRREEVKAKTITEIHSEAEKNLGLRPGATASIRNARGVISGVQGNTSPGGFPIARPGTGGLMPGMPGTRRMPGMPGIDNDNWEMPKTRSMPRGDMSGMQTGGRGQSPFLSKTSTVNTKLLPQGSGGLISGRSSALVHGGGAPSARPSNFGFGPEPTPQIPSPVKPVSAVSPEKPQAPAAKLNTDELHRKTVSLLEEYFSVRLLDEALQCVEELKAPAYYPEVVKEAISLALDKSPPCVEPVAKLLEYLFIKKIISARDIGTGCILFASLLDDIGIDLPKAPNNFGDIIGKLVLAGGLDFKVVREILKKVDDDRFQKAIFFSAMQVVSSASVQAVLDSQASDIEACQNLFK 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0850 792 MobiDBLite consensus disorder prediction 1 40 - -
Ssu6g0850 792 MobiDBLite consensus disorder prediction 24 40 - -
Ssu6g0850 792 MobiDBLite consensus disorder prediction 532 552 - -
Ssu6g0850 792 Pfam MIF4G domain 214 440 IPR003890 GO:0003723|GO:0005515
Ssu6g0850 792 Gene3D - 620 790 - -
Ssu6g0850 792 SMART if4_15 214 440 IPR003890 GO:0003723|GO:0005515
Ssu6g0850 792 MobiDBLite consensus disorder prediction 110 150 - -
Ssu6g0850 792 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 3 791 IPR045208 GO:0003743
Ssu6g0850 792 SUPERFAMILY ARM repeat 207 442 IPR016024 -
Ssu6g0850 792 ProSiteProfiles MI domain profile. 627 749 IPR003891 -
Ssu6g0850 792 Pfam MA3 domain 629 740 IPR003891 -
Ssu6g0850 792 SMART ma3_7 628 740 IPR003891 -
Ssu6g0850 792 MobiDBLite consensus disorder prediction 111 126 - -
Ssu6g0850 792 Gene3D - 205 441 - -
Ssu6g0850 792 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 3 791 - -
Ssu6g0850 792 SUPERFAMILY ARM repeat 622 772 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0850 Ssu-Chr6 13608664 13614517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0850 1 790 Eukaryotic Initiation Factors Gene Family AT5G57870 64.464 0.0 979
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0850 K03260 - gmx:100781275 1367.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0850 6 13608664 13614517 Ssu6g0850 6 13608664 13614517 ECH