Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0846 ATGGAAGCCAGCGCTGGACTGGTCGCTGGTTCTCACAATCGCAACGAGCTGGTTGTCATTCATGGCCATGAAGAGCACAAGCCTTTGAAGAACTTGGATGGGCAGGTGTGTGAGATATGTGGCGATGATGTGGGACTCACGGTGGATGGAGACTTGTTTGTGGCGTGCAATGAGTGTGGTTTTCCGGCATGCCGACCATGCTATGAGTATGAAAGAAGAGAAGGGAGACAAGTTTGTCCACAGTGCAAGACCAGATACAAGCGCCTCAAAGGGAGCCCGCGGGTTGAGGGAGATGATGATGAGGAAGACGTGGATGATATTGAACATGAATTCAACATCGAGGACCAAATGAACAAGCATAACCATTCTGCTGAGGCCATGCTGCATGGGAAGATGAGCTACGGTAGAGGTCCTGAAGATGATGAGAATGCTCAATTCCCAGCTGTTATTGCTGGTGGTCGCTCTCGCCCTGTTAGTGGGGAGTTCCCAATAACGTCTCATTATGGGGAGCAGATGTTAGCTTCTTCACTGCATAATCGAGTGCACCCATATCCGGCGTCTGATCCTCGAAATGGAAAATGGGATGAAACCAAAGAGGATAGAATGGATGACTGGAAGTTGCGACAAGGCAATTTGGGGCCTGAACCGGATGAAGATCCAGATGCAGCCATGTTGGATGAAGCAAGGCAACCACTGTCAAGGAAGGTACCAATAGCATCAAGCAAAGTGAATCCCTATAGGATGGTGATCGTGGCACGGCTTGTTATCCTTGCCTTCTTCCTCCGATATAGACTTTTGAATCCTGTACATGATGCTCTGGGGCTGTGGCTAACTTCTATTATATGTGAAATCTGGTTTGCTTTTTCATGGATCCTTGATCAGTTTCCCAAATGGTTTCCCATTGATCGAGAAACCTACCTTGATCGTCTTTCGATAAGgTATGAACGTGAAGGTGAACCCAACATGCTTGCTCCCGTGGACGTCTTTGTTAGTACTGTGGATCCCATGAAGGAACCTCCTTTGGTTACAGCAAACACTGTTCTTTCAATCTTGGCCATGGATTACCCAGTTGATAAGATATCGTGTTACATCTCTGATGATGGAGCTTCAATGTGTACATTTGAAGCCCTGTCAGAAACTGCGGAGTTTGCTAGGAAGTGGGTACCATTCTGCAAGAAATTTTCTATAGAACCTCGAGCGCCAGAGATGTACTTCTGTGAGAAAATTGACTACCTAAAGAACAAGGTGCAGCCCACCTTTGTTAAGGAGCGTCGAGCTATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGATCAATGCACTTGTGGCAAAAGCTCAGAAGGTTCCTCCAGGAGGGTGGATTATGCAGGATGGCACACCATGGCCAGGAAACAATACCAAGGATCATCCTGGTATGATTCAAGTATTTCTTGGTCACAGTGGAGGTCATGATACTGAAGGAAACGAGCTTCCTCGTCTTGTTTATGTTTCCCGAGAGAAAAGGCCTGGATTCCAACACCACAAGAAAGCTGGAGCTATGAATGCTTTGATTCGGGTCTCTGCTGTGCTCACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCATTATGTCAATAACAGCAAGGCAGCTCGAGAGGCCATGTGCTTCTTAATGGACCCCCAAACTGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCAAAGATTTGATGGCATTGATAGGCATGATCGTTATGCCAATAGGAACACAGTTTTCTTTGATATTAACATGAAGGGTCTAGATGGTATTCAGGGTCCTGTATATGTTGGCACAGGGTGTGTATTTAGGAGGCAAGCTTTATATGGCTATAATCCTTCCAAGGATCCCAAGCGTCCAAAAATGATAAGCTGTGATTGCTGCCCCTGTTTTGGAAAGCGCAAGAAGGTTAAGTATGAAGGGAATGATGCAAATGGAGAAGCAACAAGTCTAAGAGGAATGGATGATGACAAAGAGATGCTGATGTCCCAGATGAATTTTGAGAAGAAATTTGGGCAGTCATCTATTTTTGTGACTTCAACCTTGATGGAAGAGGGTGGTGTGCCTCCTTCCTCCAGTCCAGCAAGCCAGCTtaaagaagccattcatgtaatcAGCTGTGGATATGAAGATAAAACTGAATGGGGAATTGAGCTAGGTTGGATTTATGGGTCTATTACAGAGGATATTCTAACAGGTTTTAAGATGCATTGCCGTGGTTGGAGGTCCATTTATTGCATGCCAAAGAGAGCTGCATTCAAGGGTACTGCTCCTATCAACTTGTCAGATAGGCTTAACCAGGTGCTTCGTTGGGCCCTTGGTTCCATTGAGATCTTCTTCAGTCGCCATTGCCCTTTATGGTATGGCTATAAGGAAGGGAAGCTGAAGTGGCTTGAGCGATTTGCCTATGCAAACACAACTGTCTACCCCTTCACCTCCATACCTCTAGTTGCCTACTGTATTCTTCCTGCTGTCTGTTTACTCACTGATAAATTCATCATGCCACCGATAAGCACTTTCGCTGGTCTGTACTTCGTTGCTCTCTTCTCTTCAATCATTGCAACGGGCATTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAAGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTGTCAGCACACCTCTTTGCTGTCATACAAGGTCTTCTGAAGGTTCTGGCTGGAATTGACACCAACTTTACTGTTACATCCAAGGCAGCAGATGATGAGGATTTTGGAGAATTATACACCTTTAAGTGGACTACTCTCCTAATTCCTCCAACCACTATCTTAATAATCAACATTGTTGGGGTTGTTGCTGGAATCTCAGATGCCATAAACAATGGGTACCAATCCTGGGGACCTCTATTTGGGAaactattcttttcattttgggTGATTGTCCATCTGTATCCATTCCTTAAAGGTTTGATGGGTCGGCAAAACCGCACACCCACCATAGTTGTCATATGGTCAGTACTATTGGCTTCCATTTTCTCCTTGCTTTGGGTAAGAATTGACCCATTTGTATTAAAAACTAAGGGGCCTGATACCAAGCTATGTGGAATCAACTGTTGA 3105 0.4467 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDDVGLTVDGDLFVACNECGFPACRPCYEYERREGRQVCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIEDQMNKHNHSAEAMLHGKMSYGRGPEDDENAQFPAVIAGGRSRPVSGEFPITSHYGEQMLASSLHNRVHPYPASDPRNGKWDETKEDRMDDWKLRQGNLGPEPDEDPDAAMLDEARQPLSRKVPIASSKVNPYRMVIVARLVILAFFLRYRLLNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVDKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKNKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPPGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQTGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPSKDPKRPKMISCDCCPCFGKRKKVKYEGNDANGEATSLRGMDDDKEMLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPLWYGYKEGKLKWLERFAYANTTVYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEDFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0846 1034 MobiDBLite consensus disorder prediction 189 215 - -
Ssu6g0846 1034 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1034 - -
Ssu6g0846 1034 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Ssu6g0846 1034 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 1034 - -
Ssu6g0846 1034 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 472 617 IPR029044 -
Ssu6g0846 1034 SUPERFAMILY RING/U-box 21 109 - -
Ssu6g0846 1034 MobiDBLite consensus disorder prediction 180 222 - -
Ssu6g0846 1034 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Ssu6g0846 1034 SUPERFAMILY Nucleotide-diphospho-sugar transferases 339 801 IPR029044 -
Ssu6g0846 1034 Coils Coil 424 444 - -
Ssu6g0846 1034 Pfam Cellulose synthase 326 1028 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ssu6g0846 1034 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Ssu6g0846 1034 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0846 Ssu-Chr6 13573132 13578009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0846 1 1034 Cell Wall Biosynthesis AT5G17420 86.197 0.0 1840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0846 K10999 - gmx:100779834 2087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0846 6 13573132 13578009 Ssu6g0846 6 13573132 13578009 ECH