Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0840 ATGATGTGCTTGTTTAGATTAACAgtgtttctatttttctttctggaCACTGTTCATTCTAGAGTTCAGGAGAAAGAAAATGCTGGCATTGTGAACGGAAAAAGTTCACTTATTTCATTCATGTCAGGCATTGTTTCAGACCCGCAAAACTCTCTAGTGAGTTGGAAGTCACCGGGTGTTCATGTTTGTGATTGGTCAGGTGTGAGATGCAACAATGCAAGTGACATGATCATAGAGCTTGATCTCAGTGGAAGGTCACTAGGAGGCACCATTTCCCCTGCCCTTGCTAACATCTCTTCCTTGCAAATTCTTGATCTTTCTGGGAACTTTTTGGTGGATCACATTCCAAAAGAACTAGGCTATTTGGCTCAGCTTGGACAACTCAGTTTGTCCGGGAATATTCTTGAAGGGCACATTCCCTCCGAGTTTGGTTCACTTCACAACTTGTACTACCTTGACATGGGAAGCAATCATCTCGAGGGAGAGATTCCCCCATCACTTTTCTGTAATGGGACTTCACTGAGTTATGTGGACCTCTCTAACAATTCCTTAAGGGGACAAATCCCCTTGAACAATGAGTGTATCCTTAAAGAGCTCAGGTTCCTATTACTTTGGTCTAACAATCTTGTAGGCCAAGTTCCTTTAGCTCTTTCTAACTATACCAAGCTTAAATGGCTTGATTTGGAGTTGAATATGTTGAGTGGAGAGCTTCCTTCTAGGATTGTACGTAATTGGCCACAACTACAGTTCCTCTACTTGTCATATAACTATTTTGCTAGCCACGACGGTAATACCAACCTCGAACCTTTCTTTGCCTCCTTGAGGAATTTATCATACTTACAAGAACTCGAGTTGGCGGGAAACAATCTTAGTGGGAAGCTGCCTCATAATATTGACTTGTCAAGAAACAAGCTTTCTGGTTCAATACCAGATAGTTTTGCAAATCTCCCCCAGTTAAGAAGGCTTTTACTTTATGATAACCTGCTTTCTGGACCAATCCCACCAGGTCTGGGAAAATGTGTCAATCTGGAGATTTTAGACTTATCTCACAACGATATTACAGGACTGATTCATGCAGAAGTAGCAGCCTTGAGTAGCTTGAAACTATACttgaatttatcaaacaataacTTACATGGGCCTTTACCATTAGAACTCAGCAAAATGGACATGGTGCTAGCAATTGACGTATCCATGAATAATCTCTCTGGCAGCATCCCACCACAACTGGAAAGTTGCACAGCACTGGAGTACCTCAACCTCTCCGGTAATTCCTTTGAGGGCCCTCTCCCTTATTCATTAGGCCAATTGCTGTATATTAGAGCACTCGATGTGTCTTCAAATCAATTGAGAGGAGCAATACCAGAGTCCCTGCAGTTGTCTTCCTCTCTCAAGGatcttaatttctctttcaacaAATTCTCAGGGAATGTCTCAAACGAGGGAGCATTTTCAAATCTTACCATAGACTCTTTCCTGGGAAACAGTGGTCTCTGTGGCCCGTTTCAAGGCATGCAACAATGTCACAAGAAACATAGTTATCATTTGGTGTTCTTATTGATTCCTGTGTTACTATTTGGCACCCCTCTCCTGTGCATGTGTTTTAGGTACTCCATGGTAATCAAGTCAAAAGTGAGAAAGCGATTTGCAATTGTTAGCAGAGGTGATTTGGAAGATGTAGAAGAGGGAACAAAAGAGCTCAAGTACCCAAGAATTTCATATAGACAACTTAGAGAAGCCACTGGACGTTTTAGTGCTTCAAGTTTAATTGGTTCAGGCCGGTTTGGACAGGTCTACAAAGGAATGCTGCAAGATAACACAAGAATAGCTGTGAAGGTGTTGGATACAACAGCTGGTGAGATTTCAAGGAGCTTTAGAAGAGAATGTCAAATCCTGaaaaagataaggcacagaAATTTAATAAGGATCATCACAATTTGTTGTAGGCCAGAATTTAATGCCCTTGTTTTTCCCTTGATGCCAAATGGTAGCCTTGAGAGGCACCTATATCCAAGCCAAAGATTGGATGTGGTTCAATTAGTAAGAATCTGCAGTGATGTAGCTGAGGGAATGTCCTATCTGCACCATTACTCTCCAGTGAAAGTAGTGCATTGTGATCTTAAGCCAAGCAATATACTCCTTGATGAAGATATGACAGCTTTGGTTACTGATTTTGGAATTGCAAGGCTTCTACAAAGTGATGAGAGTACATCCACCAGTAACTCAGCATCTTTCAGTTCAACACATGGTTTGTTATGTGGCTCAGTTGGTTATATAGCTCCTGAACTCACTACTTTCTCACAGTATCGCTTCATTTTCTTGGACACAGAGTACGGAATGGGAAAACATGCTTCAACTGAGGGTGATGTTTACAGTTTTGGAGTACTTGTGTTGGAGATGGTCTCAGGTAGACTCCCCACGGATGTCCTCAGCCACGAAGGCTCAAGCTTGTGTGACTGGGTTAAGAGACaatacacacaaacacaccagCTTCAAAACTTTGTTGAACAAGCACTGCAAAGGTGCTTTCCTTGTGGCGTGCCAAGTCATCATCACAAAATTTGGAAAGATGTTATACTGGAACTAATTGAGCTGGGGCTACTCTGCACACAGCACAATCCTTCAACAAGACCAAGCATGCTGGATATAGCCCAAGAGATGGGGATGTTGAAGGACTACCTCACTAAGTCAACTTTGACCCGTCATTCAAGTCAATCCCAACATTAA 2727 0.4081 MMCLFRLTVFLFFFLDTVHSRVQEKENAGIVNGKSSLISFMSGIVSDPQNSLVSWKSPGVHVCDWSGVRCNNASDMIIELDLSGRSLGGTISPALANISSLQILDLSGNFLVDHIPKELGYLAQLGQLSLSGNILEGHIPSEFGSLHNLYYLDMGSNHLEGEIPPSLFCNGTSLSYVDLSNNSLRGQIPLNNECILKELRFLLLWSNNLVGQVPLALSNYTKLKWLDLELNMLSGELPSRIVRNWPQLQFLYLSYNYFASHDGNTNLEPFFASLRNLSYLQELELAGNNLSGKLPHNIDLSRNKLSGSIPDSFANLPQLRRLLLYDNLLSGPIPPGLGKCVNLEILDLSHNDITGLIHAEVAALSSLKLYLNLSNNNLHGPLPLELSKMDMVLAIDVSMNNLSGSIPPQLESCTALEYLNLSGNSFEGPLPYSLGQLLYIRALDVSSNQLRGAIPESLQLSSSLKDLNFSFNKFSGNVSNEGAFSNLTIDSFLGNSGLCGPFQGMQQCHKKHSYHLVFLLIPVLLFGTPLLCMCFRYSMVIKSKVRKRFAIVSRGDLEDVEEGTKELKYPRISYRQLREATGRFSASSLIGSGRFGQVYKGMLQDNTRIAVKVLDTTAGEISRSFRRECQILKKIRHRNLIRIITICCRPEFNALVFPLMPNGSLERHLYPSQRLDVVQLVRICSDVAEGMSYLHHYSPVKVVHCDLKPSNILLDEDMTALVTDFGIARLLQSDESTSTSNSASFSSTHGLLCGSVGYIAPELTTFSQYRFIFLDTEYGMGKHASTEGDVYSFGVLVLEMVSGRLPTDVLSHEGSSLCDWVKRQYTQTHQLQNFVEQALQRCFPCGVPSHHHKIWKDVILELIELGLLCTQHNPSTRPSMLDIAQEMGMLKDYLTKSTLTRHSSQSQH 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0840 908 SMART LRR_typ_2 316 340 IPR003591 -
Ssu6g0840 908 SMART LRR_typ_2 277 301 IPR003591 -
Ssu6g0840 908 SMART LRR_typ_2 98 122 IPR003591 -
Ssu6g0840 908 SMART LRR_typ_2 146 170 IPR003591 -
Ssu6g0840 908 PANTHER LEUCINE-RICH RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN 298 891 - -
Ssu6g0840 908 SUPERFAMILY Protein kinase-like (PK-like) 565 886 IPR011009 -
Ssu6g0840 908 PANTHER OS04G0122200 PROTEIN 23 296 - -
Ssu6g0840 908 PANTHER OS04G0122200 PROTEIN 298 891 - -
Ssu6g0840 908 SUPERFAMILY L domain-like 39 260 - -
Ssu6g0840 908 ProSitePatterns Protein kinases ATP-binding region signature. 590 612 IPR017441 GO:0005524
Ssu6g0840 908 Gene3D Phosphorylase Kinase; domain 1 563 658 - -
Ssu6g0840 908 Pfam Leucine Rich Repeat 416 435 IPR001611 GO:0005515
Ssu6g0840 908 PANTHER LEUCINE-RICH RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN 23 296 - -
Ssu6g0840 908 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Ssu6g0840 908 SUPERFAMILY L domain-like 264 500 - -
Ssu6g0840 908 Gene3D Ribonuclease Inhibitor 262 516 IPR032675 -
Ssu6g0840 908 Gene3D Ribonuclease Inhibitor 192 261 IPR032675 -
Ssu6g0840 908 Gene3D Transferase(Phosphotransferase) domain 1 660 906 - -
Ssu6g0840 908 SMART serkin_6 584 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0840 908 ProSitePatterns Serine/Threonine protein kinases active-site signature. 702 714 IPR008271 GO:0004672|GO:0006468
Ssu6g0840 908 Pfam Protein kinase domain 586 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0840 908 ProSiteProfiles Leucine-rich repeat profile. 342 363 IPR001611 GO:0005515
Ssu6g0840 908 Pfam Leucine Rich repeat 340 355 IPR001611 GO:0005515
Ssu6g0840 908 Gene3D Ribonuclease Inhibitor 32 191 IPR032675 -
Ssu6g0840 908 ProSiteProfiles Protein kinase domain profile. 584 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0840 Ssu-Chr6 13517544 13521379 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0840 34 900 Receptor kinase-like Gene Family AT3G47570 33.039 2.34e-133 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Ssu6g0840 Pkinase 8.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0840 - - gmx:100792446 1172.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0840 6 13517544 13521379 Ssu6g0840 6 13517544 13521379 ECH