Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0831 ATGGCCAAAACATCACAGCTGCGAACCCAGAAAAACAATGCAAGCAATGACAATAATCTTAACGCAACCAACACTGTCACCACCAAGGTGAAACGAACGAGGAGAAGTGTCCCTAGAGACTCCCCTCCTCAACGCAGCTCAATATACCGAGGAGTCACTAGGCACCGATGGACAGGCCGATATGAAGCTCATTTGTGGGACAAGCATTGCTGGAATGAGTcacagaaaaagaaaggacgACAAGTTGTATGCAATTTAGGCGCTTATGACAATGAAGAGGCGGCAGCACATGCTTATGATCTAGCAGCGCTGAAATACTGGGGTCAAGATACCATTCTTAATTTTCCGTTATCAAACTACCTGAACGAACTGAAAGAAATGGAGAGTCAATCACGAGAGGAATATATCGGATCGCTGAGGAGgAAAAGCAGCGGTTTTTCTCGGGGAATTTCTAAATACAGAGGTGTTGCAAGACATCATCACAACGGAAGATGGGAGGCTCGGATTGGCAAAGTTTTTGGCAATAAATATCTTTATCTCGGAACTTACGCTACCCAGGAAGAAGCTGCTACGGCCTATGACCTGGCAGCTATTGAATACCGTGGACTCAATGCTGTCACCAATTTCGATCTCAGCCGTTATATTAAGTGGCTTAAGCccaacaacatcaacaataaTGACCAAATTAGTACTAATCTTACTCACATAGATCATAATTGCACTAGCAACTTCGCCCCCAATCAAGAACAAGAAATTAGCCTCTCCCACAACCAGGAATCACTCAATAATATCGTAGAAGAAGCCACGTTGGTGCCACATCAGCCTCGTCCAGCTGGTGCCACGTCAGCATTGGAGCTTCTACTTCAGTCATCCAAGTTCAAGGAAATGACATCTGTGGCCAATAATCTGTCAACACAGCTGGAGTCTGAGTTGCCACAGTGCACATTTCCTGATCACATTCAGACATACTTTGAGTATGAAGATTCCAATAGATACGAGGAAGGGGATGATGTCATGTTCAACGAGTTCAGCTCCATTGTGCCGTTTTACCATTGTGACGAGTTCGAGAGTTGA 1074 0.4339 MAKTSQLRTQKNNASNDNNLNATNTVTTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKHCWNESQKKKGRQVVCNLGAYDNEEAAAHAYDLAALKYWGQDTILNFPLSNYLNELKEMESQSREEYIGSLRRKSSGFSRGISKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDLAAIEYRGLNAVTNFDLSRYIKWLKPNNINNNDQISTNLTHIDHNCTSNFAPNQEQEISLSHNQESLNNIVEEATLVPHQPRPAGATSALELLLQSSKFKEMTSVANNLSTQLESELPQCTFPDHIQTYFEYEDSNRYEEGDDVMFNEFSSIVPFYHCDEFES 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0831 357 CDD AP2 151 212 IPR001471 GO:0003700|GO:0006355
Ssu6g0831 357 SUPERFAMILY DNA-binding domain 47 118 IPR016177 GO:0003677
Ssu6g0831 357 Pfam AP2 domain 151 202 IPR001471 GO:0003700|GO:0006355
Ssu6g0831 357 Pfam AP2 domain 48 108 IPR001471 GO:0003700|GO:0006355
Ssu6g0831 357 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Ssu6g0831 357 PRINTS Ethylene responsive element binding protein signature 192 212 IPR001471 GO:0003700|GO:0006355
Ssu6g0831 357 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 341 - -
Ssu6g0831 357 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 341 - -
Ssu6g0831 357 ProSiteProfiles AP2/ERF domain profile. 48 116 IPR001471 GO:0003700|GO:0006355
Ssu6g0831 357 MobiDBLite consensus disorder prediction 1 31 - -
Ssu6g0831 357 SUPERFAMILY DNA-binding domain 151 212 IPR016177 GO:0003677
Ssu6g0831 357 Gene3D AP2/ERF domain 151 212 IPR036955 GO:0003700|GO:0006355
Ssu6g0831 357 Gene3D AP2/ERF domain 48 118 IPR036955 GO:0003700|GO:0006355
Ssu6g0831 357 ProSiteProfiles AP2/ERF domain profile. 152 210 IPR001471 GO:0003700|GO:0006355
Ssu6g0831 357 MobiDBLite consensus disorder prediction 1 49 - -
Ssu6g0831 357 SMART rav1_2 48 122 IPR001471 GO:0003700|GO:0006355
Ssu6g0831 357 SMART rav1_2 152 216 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0831 Ssu-Chr6 13412656 13415243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0831 44 214 AP2-EREBP Transcription Factor Family AT5G57390 71.930 4.39e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Ssu6g0831 AP2 2.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0831 K09285 - gmx:100793339 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0831 6 13412656 13415243 Ssu6g0831 6 13412656 13415243 ECH
Ssu6g0831 6 13412656 13415243 Ssu1g1884 1 49738302 49740845 PCT