Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0826 ATGATCATGGCTCTCCACTGCCTCcttctcctcttcctcctctcaCGCCTCGCACTCTGTTCCGCTTCCCAGCCTCGCAACCCCGAAGTGGAGGCTTTGATGAACGTAAAGACAGCTCTGAACGATCCACATGGCGTGTTGAACAACTGGGACGAATACTCCGTCGACGCTTGCAGTTGGGCCATGATCACTTGCTCTTCTGATTCCCTTGTCATAGGCCTGGGAGCGCCTAGCCAATCTCTCTCTGGAACTTTGTCTGCATCAATCGGAAATCTAACAAATCTTCGACAAGTGTTGTTGCAGAACAACAATATCTCAGGCAATATACCACCGGAACTTGGAGCCCTTCCCAAGCTTCAGACTCTAGACCTTTCAAATAACCGATTTTCTGGGGCGATTCCTGCGTCTCTGAGTCAATTGAATAGTCTCCAGTACCTGAGgctcaacaacaataatttgtcCGGATCCTTTCCCTTGTCACTGGCCAAAACCCCACAGCTTGCTTTCTTGGACTTGTCTTATAATAATCTCAGTGGACCATTGCCCAAGTTCCCAGCCAGGTCATTCAATATTGTGGGGAACCCATTAGTTTGTGGAAGCAGCACTACTGAAGGTTGCTCTGGATCAGCAACCCTCATGCCCTTTTCTTTCTCGCAAGTGCCACCAGAAGGAAAACACAAGTCCAAAAAACTAGCAATAGCACTTGGGGTTAGTCTTAGTTGTGTTTCTCTCATCCTCCTGTTTTTTGGGCTATTTTGGTATAGAAAGAAACGACAGCACGGAGGCATCCTGTATATCAGCGATTATAAGGAAGAGGGTGTTCTTAGCTtgggaaatctcaaaaatttcacTTTCAGAGAGCTCCAACAGGCAACGGATAATTTCAGCTCCAAGAATATACTTGGTGCTGGGGGCTTTGGCAATGTCTATAGAGGGAAGCTTGGAGATGGCACCATGGTGGCAGTGAAAAGGCTGAAAGATGTAAATGGTAGTACTGGTGAATCACAGTTCCAAACCGAGTTGGAGATGATCAGCTTGGCAGTTCACCGCAATTTACTTCGCTTAATTGGATATTGTGCTACTCCTAATGAAAAACTTTTGGTTTATCCTTATATGTCTAATGGTAGTGTGGCCTCCAGGCTTAGAGGCAAACCAGCTTTAGATTGGAACACAAGAAAGAGGATAGCAATTGGAGCTGCCAGAGGCCTTCTGTATTTGCATGAGCAATGTGATCCAAAGATAATACACAGAGATGTAAAGGCTGCCAATGTGCTTCTGGATGACTATTGTGAGGCTGTTGTTGGAGATTTTGGCCTTGCAAAGCTCCTTGACCATGCTGATTCCCATGTCACCACTGCTGTCCGTGGCACCGTTGGGCACATTGCACCAGAGTACCTCTCCACTGGCCAATCATCTGAGAAAACAGATGTATTTGGATTTGGCATTCTCTTGTTAGAACTCATAACCGGAATGACAGCACTTGAGTTTGGGAAAACGGTGAATCAAAAAGGTGCCATGCTAGAGTGGGTTAGGAAAATACTACATGAAAAGAAGGTTGCAGTGTTGGTGGACAAAGAACTAGGAAACAATTATGATAGAATAGAGGTGGGGGAGATTCTGCAAGTCGCTTTACTGTGTACTCAATATTTGACAGCCCACCGCCCTAAAATGTCTGAAGTTGTCCGAATGCTTGAAGGTGACGGGCTTGCTGAGAAGTGGGCATCATCACATAATTATGGTAGTCACGACATGAACCCCAGCCACAGCAGCAATAGCAATACTTCATCCCGCCCTACCTCTGCTTCAAAACATGATGATGATATTCATGAGCGTTCCAGCATGTTTGGTATGACAatggatgatgatgatgaacaGTCTTTGGAATCCTATGCCATGGAACTCTCTGGCCCTAGATAA 1917 0.4413 MIMALHCLLLLFLLSRLALCSASQPRNPEVEALMNVKTALNDPHGVLNNWDEYSVDACSWAMITCSSDSLVIGLGAPSQSLSGTLSASIGNLTNLRQVLLQNNNISGNIPPELGALPKLQTLDLSNNRFSGAIPASLSQLNSLQYLRLNNNNLSGSFPLSLAKTPQLAFLDLSYNNLSGPLPKFPARSFNIVGNPLVCGSSTTEGCSGSATLMPFSFSQVPPEGKHKSKKLAIALGVSLSCVSLILLFFGLFWYRKKRQHGGILYISDYKEEGVLSLGNLKNFTFRELQQATDNFSSKNILGAGGFGNVYRGKLGDGTMVAVKRLKDVNGSTGESQFQTELEMISLAVHRNLLRLIGYCATPNEKLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGAMLEWVRKILHEKKVAVLVDKELGNNYDRIEVGEILQVALLCTQYLTAHRPKMSEVVRMLEGDGLAEKWASSHNYGSHDMNPSHSSNSNTSSRPTSASKHDDDIHERSSMFGMTMDDDDEQSLESYAMELSGPR 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0826 638 Gene3D Phosphorylase Kinase; domain 1 265 371 - -
Ssu6g0826 638 Gene3D Transferase(Phosphotransferase) domain 1 372 582 - -
Ssu6g0826 638 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 638 - -
Ssu6g0826 638 MobiDBLite consensus disorder prediction 578 599 - -
Ssu6g0826 638 Pfam Protein kinase domain 296 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0826 638 MobiDBLite consensus disorder prediction 577 638 - -
Ssu6g0826 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Ssu6g0826 638 MobiDBLite consensus disorder prediction 600 618 - -
Ssu6g0826 638 ProSiteProfiles Protein kinase domain profile. 295 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0826 638 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Ssu6g0826 638 Gene3D Ribonuclease Inhibitor 26 208 IPR032675 -
Ssu6g0826 638 SUPERFAMILY Protein kinase-like (PK-like) 277 565 IPR011009 -
Ssu6g0826 638 SMART serkin_6 295 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0826 638 SUPERFAMILY L domain-like 26 191 - -
Ssu6g0826 638 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 638 - -
Ssu6g0826 638 Pfam Leucine rich repeat 117 177 IPR001611 GO:0005515
Ssu6g0826 638 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0826 Ssu-Chr6 13275552 13280266 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0826 1 638 Receptor kinase-like Gene Family AT5G16000 63.497 0.0 799
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Ssu6g0826 Pkinase 2.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0826 - - gmx:100797186 1149.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0826 6 13275552 13280266 Ssu6g0826 6 13275552 13280266 ECH