Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0813 ATGCCTAAGTTGTCACCGATTTACGAGAAGCACCAGCGCGTGTGGCTCAGCACCTTCAATGAGGAAGACGAGGCCACCAGAGCCTACGACATCGTCGCAGATAGGTTTCGTGACCTCAATGCCGTCACAAACTTCAAGCCTCTCTCTGGCGCTTGCAACGACACTGAATTCGTGTTCCTCAACTTGCATTCCAAGTCTGAGATAGTCAACATGCTCCGCAAGCACACCTACAACAATGAGCTCCAGCAAAGCATGCACGGTGGGAGGCACTGTTGCAATGGCAAGACAAACACATTTGCATTAGGCGGCACGTGCAACTGA 321 0.5171 MPKLSPIYEKHQRVWLSTFNEEDEATRAYDIVADRFRDLNAVTNFKPLSGACNDTEFVFLNLHSKSEIVNMLRKHTYNNELQQSMHGGRHCCNGKTNTFALGGTCN 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0813 106 SUPERFAMILY DNA-binding domain 8 46 IPR016177 GO:0003677
Ssu6g0813 106 SMART rav1_2 2 52 IPR001471 GO:0003700|GO:0006355
Ssu6g0813 106 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 7 97 IPR044800 GO:0003700
Ssu6g0813 106 ProSiteProfiles AP2/ERF domain profile. 1 46 IPR001471 GO:0003700|GO:0006355
Ssu6g0813 106 Gene3D AP2/ERF domain 4 47 IPR036955 GO:0003700|GO:0006355
Ssu6g0813 106 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 7 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0813 Ssu-Chr6 13075186 13079177 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0813 7 106 RAV Transcription Factor Family AT1G13260 60.396 9.92e-31 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0813 K09287 - gmx:100789009 128.642