Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0812 ATGGGTGGTTTAGCTGGCCATCTTCCTCTAATTCTTATGATAGTTTTGCAAATTCATTATGCAGCACTTGCCATCTTCACAAGAGCCGCTCTGTTGGATGGGTTGAGTCCAACGGTCTTTGTAGTGTACAGGCAAGGCATAGCCACTTTGTCTTTGGCGCCTATGTTTTTCTCTCCTAAGCGGAGACAATCAGTAAAAAATTCATTGGGATTCAGGAGCTTCACTTTGATGTTTGTGACCGCTCTTGTTGGaGTCACAGCAAATCAGAATGCATATTTTAGAGGTTTATATTATGCATCTTCTACTGCAGCGACAGCAATGAGTAATCTGATACCGGCGTTAACGTTTGTAATTGCAGCAATTGTTGGATTTGAGAAAATTGATCTACGAAGCTTAAGAAGCATGGCCAAGATACTAGGGACAGTTTGTTGCGTGAGTGGAGCCTTAATCATGGCATTCGTCAAAGGACAGAAGTTGTTACACACAGAGTTCCTTCCTTCTATACATCTCACTAGCAGTGGAGGTGATGATTGGTTGCTAGGTTGTCTGTTGCTCTTAGCAAGTAGTGTTTTTTGGTCAAGTTGGATGATCCTGCAGGTACCAATTGCTTCATGCTGCCCCGACCATTTATTATCAACCTTTTGGATGTGTCTCTTTTCAACAATGCAATCAGCCATATTTGCACTGCTCTCTGAGCCGGGGGATCTTCAAGCATGGATTTTACACTCACCTCTACAATTTTCATGTTCTTTATATGCAgGAATCGGAATTGCTGTTAGCTTCTTTATTCAATCCTGGTGCATCTCAGAAAGAGGTCCGTTGTACTGTGCAATGTTCAATCCTTTAGCAACAGTCATCACTGCTTTGATAACTGCAACATTCCTACAGGAAGAGTTATACGTTGGAAGTTTGATAGGGGCTGTTGGAGTTATTGCTGGTTTATATATTGTGCTTTGGGGTAAAGCCAAAGAGTTTGAGGAGGTTAAACAAGAGGCACCACAATCAAACTCGCAAGATGATGGGATAAATAGTAGGATAGATTTGGAAGAACCGCTTCTGTCAGAGAAGTCTGAACATGTAGCAGAAGCAGAGAACAAGGTGTAG 1104 0.4203 MGGLAGHLPLILMIVLQIHYAALAIFTRAALLDGLSPTVFVVYRQGIATLSLAPMFFSPKRRQSVKNSLGFRSFTLMFVTALVGVTANQNAYFRGLYYASSTAATAMSNLIPALTFVIAAIVGFEKIDLRSLRSMAKILGTVCCVSGALIMAFVKGQKLLHTEFLPSIHLTSSGGDDWLLGCLLLLASSVFWSSWMILQVPIASCCPDHLLSTFWMCLFSTMQSAIFALLSEPGDLQAWILHSPLQFSCSLYAGIGIAVSFFIQSWCISERGPLYCAMFNPLATVITALITATFLQEELYVGSLIGAVGVIAGLYIVLWGKAKEFEEVKQEAPQSNSQDDGINSRIDLEEPLLSEKSEHVAEAENKV 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0812 367 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 152 - -
Ssu6g0812 367 Pfam EamA-like transporter family 180 318 IPR000620 GO:0016020|GO:0016021
Ssu6g0812 367 Pfam EamA-like transporter family 8 151 IPR000620 GO:0016020|GO:0016021
Ssu6g0812 367 PANTHER WAT1-RELATED PROTEIN 10 343 - -
Ssu6g0812 367 PANTHER WAT1-RELATED PROTEIN 10 343 IPR030184 GO:0016021|GO:0022857
Ssu6g0812 367 SUPERFAMILY Multidrug resistance efflux transporter EmrE 227 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0812 Ssu-Chr6 13071102 13073185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0812 1 355 Nodulin-like Gene Family AT4G30420 44.385 1.28e-108 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0812 - - gmx:100817369 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0812 6 13071102 13073185 Ssu6g0812 6 13071102 13073185 ECH