Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0802 ATGGGCAAGAGTGATGCCTTTGTGTCTCCACTAGAGCAGCCACCATATTTTCTCTCACAGCCAAACCCACCTTTTCCACCCACTGGTCGATCTGATGGTTTCAGTTTGAACGATAGGGCCTTGAAGGTTAGTCCAAGCATCCTTCTCATGATCATAATTCTGGCTattgttttcttcatttctGGTTTGCTCCACCTGCTGGTTAGATTCCTGTGGAGACCCCAAACTAGAGAGCCTGATGACATGGACAATGTCACTGCTCTCCAAGGACAATTGCAGCAACTTTTCCACCTCCATGATGCTGGGGTTGACCAGTCCTTCATTGACACCCTCCCTGTGTTCCTCTACAAGGCCATCATAGGACTCAAGAACCCCTTTGACTGCGCCGTTTGTTTGTGTGAGTTTGAGCCTGATGACAAGCTCAGGCTGCTGCCAAAATGTAGCCACGCCTTTCACGTGGAGTGTATTGACACCTGGCTCTTGTCTCACTCTACTTGTCCTCTTTGTAGAGCTAGTTTGCTCCCTGAATTCTCTGCAAGCAACACGTGTTCCCCTATTGTTCTTGTCCTAGAATCTGGGAGTGAGAGTTCTAGGGAGATTGTTCCTGAAAGAGAGGCTGCTGTTGGAAGGACTAGTTCGGTTATGACAACTAATTCTCGTATTGGTTGCCGTGGAGACAGTGAATTTGGATCAACCCGTGTGGATTTGAAATCAGGTGAGTTATTAAGTGACAATCCTGATCCAACAGCAGGAGATGGTGTGGAAAAAGTGGTCACTGTTAAGCTGGGGAAGTTTAGAAGTGTGgatggtggaggtggaggtggggAAGGGAGTAGTAGTAGCAACAATGTGGACGCTAGAAGGTGTTTTTCTATGGGTTCATTTGCTTATGTTATGGATGAGAGTTCCTCACTGCAAGTGCCCATAAGAACACCAATGAAGAAGCAATCAAGCAAGAAGAAGTCTGGTTTGCCTTTGACTCCAGGGCACAGGCCTGCAATGTCAGAATGTGACTGTGAATCCAGAAGGGATTTCAAGTTTGCATGCTTTGATGCAACTATAGTTGAGGATGCTGCTGCTACTGGGGATGCAAGTACAACTTGTAGTGGGAATGATGCTGCTATTGGAAGGAACAGAAAGGAGAGTTTTTCTATATCAAAGATTTGGCTTAGGGGGAAGAAGGATAGGCCAAATGCTGTGGCGGATTCGTCTAGAAGGGCTGTTTCATTTCGCTTCCCGGCGCAGCCTAGTGTTGTTGCTGCTTCTGCTAGTGATTTGAAGGGCAAGAATTGCAAGTTTGACACAAGGAGTACTATTTCTGAGATGGATATTGGCAAGTGGGAAAATGGGGGAGGAAGTGAGTTCGATTATGATGAGGAAAACCAGAGTTGTTATAGCATGGATTCTCAAGCTAGGGCGCCATCTTTCGCTAGAAGGACTTTGCTTTGGCTCACGGGAAGACAGAATAAGGTTGTTCACTCTGCTTCCAACCTCTAG 1497 0.4536 MGKSDAFVSPLEQPPYFLSQPNPPFPPTGRSDGFSLNDRALKVSPSILLMIIILAIVFFISGLLHLLVRFLWRPQTREPDDMDNVTALQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKNPFDCAVCLCEFEPDDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRASLLPEFSASNTCSPIVLVLESGSESSREIVPEREAAVGRTSSVMTTNSRIGCRGDSEFGSTRVDLKSGELLSDNPDPTAGDGVEKVVTVKLGKFRSVDGGGGGGEGSSSSNNVDARRCFSMGSFAYVMDESSSLQVPIRTPMKKQSSKKKSGLPLTPGHRPAMSECDCESRRDFKFACFDATIVEDAAATGDASTTCSGNDAAIGRNRKESFSISKIWLRGKKDRPNAVADSSRRAVSFRFPAQPSVVAASASDLKGKNCKFDTRSTISEMDIGKWENGGGSEFDYDEENQSCYSMDSQARAPSFARRTLLWLTGRQNKVVHSASNL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0802 498 SMART ring_2 128 169 IPR001841 -
Ssu6g0802 498 MobiDBLite consensus disorder prediction 308 333 - -
Ssu6g0802 498 Pfam Ring finger domain 127 170 IPR001841 -
Ssu6g0802 498 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 13 402 - -
Ssu6g0802 498 SUPERFAMILY RING/U-box 107 177 - -
Ssu6g0802 498 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 13 402 - -
Ssu6g0802 498 MobiDBLite consensus disorder prediction 308 323 - -
Ssu6g0802 498 CDD RING-H2_PA-TM-RING 127 170 - -
Ssu6g0802 498 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 175 IPR013083 -
Ssu6g0802 498 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0802 Ssu-Chr6 12830959 12832455 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0802 35 498 C3H Transcription Factor Family AT2G18650 45.756 1.06e-102 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0802 - - gmx:100797283 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0802 6 12830959 12832455 Ssu6g0802 6 12830959 12832455 ECH