Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0801 ATGCCTTCTCCTACAGATCAACAAGAGGTCCATGACCACCAGTTCCGATCTCAATCTCAATCCCAACCAAAACCTAACCCCAACCTCCTTTCCCTCTTCCTCAAGCCCATCATCATGCTCCTCCTCACCtccctcttcttcctcttcctcggCTTCGCCGccttcctcctcctccacctcTTCCTCCTCGGCGGCGCCTTCCACCGCCTCCGCTCCCGCCCCGCCGCCGGCCCAACCTCCTCCAACGGCCTCCCCGCCCGCGAAATCAACAAGCTCCCCCGCTTTCGGCTCTCCAACGGATCCGCGCCCCGACCCGACTCAAATTGCGTCGTCTGCTTGGACGCCTTCCGCAACGGCCAGTGGTGCCGAAAGCTCGCCGCCTGCGGCCACGTCTTTCACCGCAGGTGCGTCGACACCTGGCTCCTCAAGGTCGCCGCATGCCCCACGTGCCGGACACCCGTGCGATTCTATGCCGGAGCTCCGCTACATGACCCCACAGAGGGTTCCTGCCGAACTCGCACCAATGCTCTCACCCTTTTATAG 543 0.5783 MPSPTDQQEVHDHQFRSQSQSQPKPNPNLLSLFLKPIIMLLLTSLFFLFLGFAAFLLLHLFLLGGAFHRLRSRPAAGPTSSNGLPAREINKLPRFRLSNGSAPRPDSNCVVCLDAFRNGQWCRKLAACGHVFHRRCVDTWLLKVAACPTCRTPVRFYAGAPLHDPTEGSCRTRTNALTLL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0801 180 SMART ring_2 109 150 IPR001841 -
Ssu6g0801 180 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Ssu6g0801 180 SUPERFAMILY RING/U-box 104 157 - -
Ssu6g0801 180 PANTHER RING-H2 FINGER PROTEIN ATL56 8 158 - -
Ssu6g0801 180 Pfam Ring finger domain 108 151 IPR001841 -
Ssu6g0801 180 MobiDBLite consensus disorder prediction 1 23 - -
Ssu6g0801 180 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 8 158 - -
Ssu6g0801 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 157 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0801 Ssu-Chr6 12816487 12817029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0801 24 169 C3H Transcription Factor Family AT2G18670 48.299 6.85e-37 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0801 - - gmx:102664895 234.572