LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu6g0798	ATGCTCTCAAGATCTTGCTTGGGGCTGTTGAATTTGGTATCAGTGGATGACTACACGGCGGTGGGTCGGGTCCCGCGGGTGATGACGACGGTGGCCGGAGACCTGCCGGAGTTGGACATCAGCGGCGCGGAGAATTGGGGATCCGACGACGTCGTTTCGCCGGTCACGCGCGAGCGTAGGATCGTGGTCGCGAATCAGTTACCGATACGCGCCATTCGCGAGGGGAAGAAATGGAGGTTCGAGTGGGACAAAGACAGCCTGGTGCTGCAGCTGAAGGACGGGTTTCCTTCCGATTTAGAAGTGTTGTACGTTGGTTCACTGAAAGCAGAGATCGAAGCGTGCGAACAAGAAGAAGTGGCTCAGTCACTTCTGGAGAGGTTTCGGTGCGTGCCAACGTTTTTACCCGCGGAGGTTGAGAACAAGTTTTATCACGGTTTCTGCAAGCATTACCTGTGGCCTCTGTTTCACTACATGCTACCGATGTCGCCGAGTCAAGGCGCGCGTTTCGAGCGCGCGGAGTGGCAGGCGTACGTGCTGGCGAACAGGATCTTCGCCGACAAGGTGACGGAGGTTATCAACCCGGACGAGGATTATGTGTGGGTTCACGACTACCACCTGATGATCCTCCCGACTCTGCTTCGGAAGCGGTTCCACCGCGTGAAGCTGGGGTTCTTCTTGCACAACACGTTTCCCTCGTCGGAGATATACCGGACGCTGCCGGTCCGCGAGGAGATTCTGCGCGCGTTTTTGAACTGCGACTTGATCGGGTTCCACACTTTCGACTACGCGCGGCATTTTTTGTCGTGTTGCAGCAGGATGTTGGGGCTGGATTACGAGTCGAAGAGGGGTTACATTGGTCTGGATTACTACGGGCGGACCGTGACCGTTAAGATCCTCCCCGCGGGGATTCACATGGGGCTGTTGGAGTCCGTGCTGTCGTTGCCGCAGACGGCGTTGAGGGTGAAGGAGCTGAGGGAGGAGTTCGAGGGGAAGGTTGTGATCTTGGGGGTGGATGACATGGACTTGTTCAAGGGCATTAGCTTCAAGTTCTTGGCGTTGGGGAAGCTTCTGGAAGTGGACCAAGGGTTGAGGGGTCGCGTCGTGTTGGTTCAGATTCTTAATGCTGCCAGGAGCAGAGGGAAGGACATTCAGGACGTGAAGAACGAGAGCGAGGCTATTGCGAGGGAGATCAATGAGAAATATGGCCAACCCGGCTACCGCCCTATTGTTCTCGTCAATGGCCCCGTTTCCACGCAGGAGAAGGCTGCGTATTACGCTATTTCTCATTGCTGCGTTGTCAATGCGGTCAGGGATGGGATGAATTTGGTGCCTTATGAGTACACCGTTTGTAGGCACGGAACTGTTGCTTTGGACAAGGCGCTTGGGGTTGAAAATCAGGGTAAAACCCTTAAACAGAGCGTTATCATTGTGTCCGAGTTCATAGGCTGTTCTCCTTCTCTCAGTGGAGCCATCCGGGTGAATCCTTGGAACATTGACGAGGTCGCTGAGGCCATGAATTCGGCTATCACAATGTCGGAGGCAGAGAAGCAGTTGCGCCATGAGAAGCATTATAAGTACATAAGTTCTCATGATGTGGCGTATTGGGCTAGGAGTTTTGATCAGGATTTGGATAGAGCTTGTAGGGAGCATTACTCCAAGAGGTATTTGGGCGTTGGCTTAGGGTTGGGGTTTAGAATCGTTGCTTTGGATCCTACCTTTAAGAAGCTTTCCGTGGATCACGTTGCCTCTGCATACAGAGACACACGCAGTCGGTTGATCCTTTTGGACTACGATGGCACCATGATGCCGCAGGCAACAATAAACAAGACTCCAAGCGGGCAAGTTATTTCTGTCTTGAATTATTTATGCAGTGATCCTGAAAACATGGTGTTCATTGTGAGCGGCAGGGATAAGGATTGCCTGACCAAGTGGTTTTCTCCGTGTGAGAAATTGGGTCTCTCTGCTGAGCATGGTTACTTCACTAGATGGAGTAAGGATTCTCCTTGGGAGACTTGCGGATTGACGACCGATTTTGAATGGAAAATGATTGCAGAACCTGTGATGGAGCTTTATAGAGAAGCAACTGATGGTTCCTTCATTGAACACAAGGAAAGCGCAATGGTTTGGCACCATCAAGAAGCGGACCCATATTTTGGATCATGCCAAGCGAAAGAGCTTCTTGATCACCTCGAGAGTGTGCTGGCCAATGAGCCGGTAGTGGTTATAAAGGGACAACATATAGTTGAAGTTAAACCTCAGGGTGTGAGCAAAGGTAAAGTGGTGGAAGACCTTATCTCAACCATGCGTAGTAAGGGGAGGTCGCCAGATTTTCTACTGTGCATAGGAGATGATCGCTCAGATGAAGATATGTTTGAAAGCATTGCTCGTTCAGTATCTAATCCAGCTCAGCCAACCATATCAAAAATGTTTGCATGCACTGTTGGACTGAAACCAAGTATGGCTAAATACTTTTTGGAGGATAGTAGCGAAGTCATCAGGTTGCTCGAGGGACTTGCAACCGCATCAGCACCACCTTCGTCCATAACTTCTCAGGAACTGTGA	2562	0.5129	MLSRSCLGLLNLVSVDDYTAVGRVPRVMTTVAGDLPELDISGAENWGSDDVVSPVTRERRIVVANQLPIRAIREGKKWRFEWDKDSLVLQLKDGFPSDLEVLYVGSLKAEIEACEQEEVAQSLLERFRCVPTFLPAEVENKFYHGFCKHYLWPLFHYMLPMSPSQGARFERAEWQAYVLANRIFADKVTEVINPDEDYVWVHDYHLMILPTLLRKRFHRVKLGFFLHNTFPSSEIYRTLPVREEILRAFLNCDLIGFHTFDYARHFLSCCSRMLGLDYESKRGYIGLDYYGRTVTVKILPAGIHMGLLESVLSLPQTALRVKELREEFEGKVVILGVDDMDLFKGISFKFLALGKLLEVDQGLRGRVVLVQILNAARSRGKDIQDVKNESEAIAREINEKYGQPGYRPIVLVNGPVSTQEKAAYYAISHCCVVNAVRDGMNLVPYEYTVCRHGTVALDKALGVENQGKTLKQSVIIVSEFIGCSPSLSGAIRVNPWNIDEVAEAMNSAITMSEAEKQLRHEKHYKYISSHDVAYWARSFDQDLDRACREHYSKRYLGVGLGLGFRIVALDPTFKKLSVDHVASAYRDTRSRLILLDYDGTMMPQATINKTPSGQVISVLNYLCSDPENMVFIVSGRDKDCLTKWFSPCEKLGLSAEHGYFTRWSKDSPWETCGLTTDFEWKMIAEPVMELYREATDGSFIEHKESAMVWHHQEADPYFGSCQAKELLDHLESVLANEPVVVIKGQHIVEVKPQGVSKGKVVEDLISTMRSKGRSPDFLLCIGDDRSDEDMFESIARSVSNPAQPTISKMFACTVGLKPSMAKYFLEDSSEVIRLLEGLATASAPPSSITSQEL	853

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu6g0798	853	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	592	796	IPR006379	-
	Ssu6g0798	853	Gene3D	Glycogen Phosphorylase B;	311	528	-	-
	Ssu6g0798	853	Gene3D	Glycogen Phosphorylase B;	51	310	-	-
	Ssu6g0798	853	CDD	GT20_TPS	59	543	IPR001830	GO:0003824\|GO:0005992
	Ssu6g0798	853	Pfam	Trehalose-phosphatase	594	829	IPR003337	GO:0003824\|GO:0005992
	Ssu6g0798	853	CDD	HAD_TPP	592	833	-	-
	Ssu6g0798	853	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 11-RELATED	1	845	-	-
	Ssu6g0798	853	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	59	548	-	-
	Ssu6g0798	853	TIGRFAM	T6PP: trehalose-phosphatase	589	839	IPR003337	GO:0003824\|GO:0005992
	Ssu6g0798	853	Pfam	Glycosyltransferase family 20	59	544	IPR001830	GO:0003824\|GO:0005992
	Ssu6g0798	853	Gene3D	-	590	693	IPR023214	-
	Ssu6g0798	853	Gene3D	-	720	848	IPR023214	-
	Ssu6g0798	853	SUPERFAMILY	HAD-like	591	839	IPR036412	-
	Ssu6g0798	853	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	1	845	IPR001830	GO:0003824\|GO:0005992

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu6g0798	Ssu-Chr6	12761419	12764270	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu6g0798	10	842	Trehalose Biosynthesis Gene Families	AT2G18700	66.865	0.0	1174

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu6g0798	K16055		-	gmx:100810498	1568.13