Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0792 ATGGGTCAGTGCTTCTCATCCCTTTTCTCTCGGTTGCTGATCTTTTTGCTTGTGCTGCTACAGACACAAACGGGGAATGGGTCAAATGCAACATCGAAGTCGGGAGTGATCAAGTTGAGAGTAGGGGTACCCAAGAAAGATGGTTTCCGCCAATTTGTGAATGTAGTTTGGGACTCCCGTGAAGAAAAGTACAACGTATCTGGATATTGCATGGAGGTTTTCAAAGCCGTTGTAAACCTCTTGCCTTTCAATAATGTTTCTCTAGATATTGAACCTTATGTTATTGATGTATCAAGGGAGACATACGATGCACTTCTCCAACAGATCCCGGCAAAGTATGATGTTGTGGTAGGGGATGTGACAATCCTGGCCAACCGTTCAAATTTCGTAGATTTCACACTGCCATATACAGGATCGGGAGTTCAAATGTTAGTACCAGTTCAACATGGGAGGCACCAAACCATGTGGATTTTTGTCAAACCCTACAGCTGGGATCTTTGGTTGAGCATAGTCATGATCTCTATGTTCATAGGGGTTGCCATACTAATCATGGAAAGAAATGTAAATGCACTGCCCGATCAGGAGGGTTCGTCAATTCGAAGAAAGCTTGGCGCTGCAACCATCTTATGGTTTCCAATTTCACAGGCCATTCTTCCTGAaaGACAAATAGTGGCGATGAGCTGCTCGAGATTTGTGTTGATGGTGTGGCTTGTATTAGCGTTCGTCCTCATGCAAAGTTACACGGCAAACTTGACGTCTATATTGACCTTGGATCAGCTGCGACCCAGATTTCTCAACGTAAATGATCTAAGAAAAGGGGGTTATTATGTTGGGTATCAAACCGGGTCTTTCGTTTATGATGTGTTGGTACAGCAATTTAAGTTTGACCCATCCAAGCTGAGGGCATACGGCAGCATTTCTGAGTATCATCATTCTTTAAATGTTGGAAGCCAAGGGGGGGGAGTTGCAGCTATATTCGATGAAGTGCCATACCTTAAAGTCTACCTTCAAAAATACGGATCCAATTACATCTTGGCCGGCCCGAGATATAGAAATGATGGGTTTGGTTTTgCATTCCCTTTAAATTCCAATCTCACCACTTACTTTTCGAGAGCCATCTTGAATGTGAttgaaagtgatttaatgaatgaaattgaggaaaaatattttgggAAGAATGATATTGGAGAAGGAGACCCATCAACGCAAATGTCTTCCGATACTCAAAGTCTCACTTTCCATAGCTTTGCAGGGCTCTTCTTGATCACCGGGATTGCTACTTTTTTAGCGCTACTGGTCTCAGAAACTACTGTTTTATGGCAAAGACTCATTTTGATGGCTAAAGCATATAGTCAGAGGTATTTGTTCCCCGCTCCACCTTCCACAGAAACAAGCGTTCATCCAACTCATGATTCAACACAAGGAATAAAGGCCGTTTAA 1440 0.4188 MGQCFSSLFSRLLIFLLVLLQTQTGNGSNATSKSGVIKLRVGVPKKDGFRQFVNVVWDSREEKYNVSGYCMEVFKAVVNLLPFNNVSLDIEPYVIDVSRETYDALLQQIPAKYDVVVGDVTILANRSNFVDFTLPYTGSGVQMLVPVQHGRHQTMWIFVKPYSWDLWLSIVMISMFIGVAILIMERNVNALPDQEGSSIRRKLGAATILWFPISQAILPERQIVAMSCSRFVLMVWLVLAFVLMQSYTANLTSILTLDQLRPRFLNVNDLRKGGYYVGYQTGSFVYDVLVQQFKFDPSKLRAYGSISEYHHSLNVGSQGGGVAAIFDEVPYLKVYLQKYGSNYILAGPRYRNDGFGFAFPLNSNLTTYFSRAILNVIESDLMNEIEEKYFGKNDIGEGDPSTQMSSDTQSLTFHSFAGLFLITGIATFLALLVSETTVLWQRLILMAKAYSQRYLFPAPPSTETSVHPTHDSTQGIKAV 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0792 479 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 475 - -
Ssu6g0792 479 SUPERFAMILY Periplasmic binding protein-like II 9 393 - -
Ssu6g0792 479 Pfam Ligand-gated ion channel 393 426 IPR001320 GO:0015276|GO:0016020
Ssu6g0792 479 MobiDBLite consensus disorder prediction 460 479 - -
Ssu6g0792 479 SMART GluR_14 38 392 IPR001320 GO:0015276|GO:0016020
Ssu6g0792 479 Pfam Bacterial extracellular solute-binding proteins, family 3 65 392 IPR001638 -
Ssu6g0792 479 Gene3D - 155 296 - -
Ssu6g0792 479 Gene3D - 34 154 - -
Ssu6g0792 479 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 1 475 - -
Ssu6g0792 479 CDD GluR_Plant 38 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0792 Ssu-Chr6 12567955 12570158 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0792 38 459 Ion Channels AT5G11210 37.529 1.82e-87 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0792 K05387 - gmx:100811144 705.671