Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0791 ATGCTTGTACCAGTTCAACATGGGAGGCACCAAAGCATGTGGATTTTTGTCAAACCTTTCAGCTGGGATCTTTGGTTGAGCATAGTCATGATCTCTATGTTCATAGGGGTTTCCATACACATCATGGAAAGAAATGTAAATGCGCTGCCTAATCAGGAGGGTTTGCCAAATCGAAGAAATCTTAGCGCTGCAACCATCTTATGGTTTCCAATTTCACAAGCCATTCTTCCTGAaaGACAATTAGTGGCGATGAACTGCTCGAGATTTGTGTTGATGGTTTGGCTTCTATTGGCGTTCGTCCTCATGCAAAGTTACACCGCAAACTTGACGTCTATATTGACTTTGGATCAGTTGCGACCCAGTGTTCTCAACGTAAATGATCTAAAAAAAGGGGGTTATTATGTTGGATATCAAACCGGGTCTTTCATTTATGATGTGTTGGTTAAGCAATTTAAGTTTGACCCGTCCAAGCTGAAGCCATACAGCAACAGTTCTGACTATCATCATGCTCTAAGTATTGGAAGCCAGGGTGGGGGTGTTGAAGCTATATTTGACGAAGTGCCCTACCTCAAAGTCTACCTTCAAGAATACGGATCCAATTACATTTTGGTCGGCCCGAGATATAGAAATGATGGGTTTGGTTTTgcaTTCCCTTTAAACTCCAATCTCACGGCTCACTTTTCGAGAGCCATCTTGAAGGTGACTGAAAGTGATTCAATGAATGAAATTgaggaaaaatattttgggAAGAATGTAATTGGAGGAGAAGACCCGTCTGCGCAAATGTCTTCCGGTACTCAAAGTCTCACCTTTCATAGTTTTGCAGGGCTCTTCTTAATCACCGGGATTGCTACTTTTTTAGCGCTGTTGGTCTCAGAAACTGTTATATGGCAAAGGCCCATTTTGATGGCTAAAGCATATAGTCGGAGGTATTTGTTCCCCACTACGCCTTCCCCAGAAACAACACGCGTTCATCCAACTCATGATTCAACACACGGAATAGAGGCCGTTTAA 1014 0.4181 MLVPVQHGRHQSMWIFVKPFSWDLWLSIVMISMFIGVSIHIMERNVNALPNQEGLPNRRNLSAATILWFPISQAILPERQLVAMNCSRFVLMVWLLLAFVLMQSYTANLTSILTLDQLRPSVLNVNDLKKGGYYVGYQTGSFIYDVLVKQFKFDPSKLKPYSNSSDYHHALSIGSQGGGVEAIFDEVPYLKVYLQEYGSNYILVGPRYRNDGFGFAFPLNSNLTAHFSRAILKVTESDSMNEIEEKYFGKNVIGGEDPSAQMSSGTQSLTFHSFAGLFLITGIATFLALLVSETVIWQRPILMAKAYSRRYLFPTTPSPETTRVHPTHDSTHGIEAV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0791 337 MobiDBLite consensus disorder prediction 318 337 - -
Ssu6g0791 337 Pfam Bacterial extracellular solute-binding proteins, family 3 101 250 IPR001638 -
Ssu6g0791 337 Pfam Ligand-gated ion channel 21 284 IPR001320 GO:0015276|GO:0016020
Ssu6g0791 337 SUPERFAMILY Periplasmic binding protein-like II 1 251 - -
Ssu6g0791 337 Gene3D - 195 254 - -
Ssu6g0791 337 Gene3D - 9 153 - -
Ssu6g0791 337 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 1 333 - -
Ssu6g0791 337 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 333 - -
Ssu6g0791 337 SMART GluR_14 34 250 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0791 Ssu-Chr6 12526988 12528636 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0791 1 291 Ion Channels AT2G29110 43.299 2.26e-64 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0791 K05387 - gmx:100807817 534.643