Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0787 ATGGGATCCTCCTTCAGTTGCTGCGGCTCAGAGAGGATCGAAGAAGTGCCAACATCATTTGGTGTAGTTAACAATTCCTGGAGAATATTCACATACAAGGAGTTGCATGCTGCTACCAACGGATTCAGTGATGATAACAAGCTTGGTGAAGGTGGTTTTGGAAGTGTCTATTGGGGAAGAACCAGTGATGGTCTTCAGATAGCGGTGAAGAAACTGAAAGCAATGAACTCAAAGGCAGAGATGGAATTTGCTGTAGAAGTTGAAGTTCTTGGAAGGGTTAGGCACAAAAATTTGCTGGGTCTTAGGGGCTATTGTGTTGGGGATGATCAACGGCTCATAGTCTACGATTACATGCCAAATCTCAGCCTGCTTTCTCATCTCCATGGCCAGTTTGCTGTTGAAGTGCAACTGAACTGGCAAAGGAGAATGAAGATTGCAATTGGCTCTGCAGAAGGCCTTCTGTACTTGCACCGTGAGGTCACACCCCACATCATCCATAGGGACATCAAAGCAAGTAACGTGCTTCTGAATTCAGATTTTGAGCCTCTAGTTGCGGATTTTGGATTTGCAAAGCTAATTCCAGAAGGAGTTAGCCACATGACTACCCGTGTGAAGGGTACCTTGGGATACTTAGCACCTGAATATGCCATGTGGGGAAAGGTCTCTGAAAGTTGTGATGTGTATAGCTTTGGAATTCTTCTGTTGGAACTTGTAACTGGTAGAAAGCCCATAGAGAAGCTCCCGGGTGGGCTTAAGAGAACAATAACTGAGTGGGCCGAGCCTCTAATAACCAAAGGAAAGTTTAGGGATCTGGTTGATCCAAAGCTCAGAGGGAACTTTGATGAAAATCAAGTCAAACAAGCAATCAATGTGGCTGCTCTTTGTGTGCAGAGTGAGCCTGAGAAGCGACCAAACATGAAGCAAGTGGTTAACCTTCTGAAAGGTTATGAATCTGATGAGAAAGTCACGACGATGAGGATAGATAGTATCAAGTATAATGAAGAACTATTGGCACTTGATCAGCCTagtgatgaagatgaagatgaagatgaagatgatgcAACCGCTAGTTATGGTGTTTTTAGTGCCATTGAAGTCCAAAAGATGAATGATCCATACAAGCGCGGTGATGACAAGAAAATGGGCTAA 1149 0.4291 MGSSFSCCGSERIEEVPTSFGVVNNSWRIFTYKELHAATNGFSDDNKLGEGGFGSVYWGRTSDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCVGDDQRLIVYDYMPNLSLLSHLHGQFAVEVQLNWQRRMKIAIGSAEGLLYLHREVTPHIIHRDIKASNVLLNSDFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPGGLKRTITEWAEPLITKGKFRDLVDPKLRGNFDENQVKQAINVAALCVQSEPEKRPNMKQVVNLLKGYESDEKVTTMRIDSIKYNEELLALDQPSDEDEDEDEDDATASYGVFSAIEVQKMNDPYKRGDDKKMG 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0787 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Ssu6g0787 382 ProSiteProfiles Protein kinase domain profile. 42 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0787 382 SMART serkin_6 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0787 382 MobiDBLite consensus disorder prediction 338 361 - -
Ssu6g0787 382 Gene3D Transferase(Phosphotransferase) domain 1 118 336 - -
Ssu6g0787 382 Gene3D Phosphorylase Kinase; domain 1 15 117 - -
Ssu6g0787 382 CDD STKc_IRAK 48 315 - -
Ssu6g0787 382 SUPERFAMILY Protein kinase-like (PK-like) 26 321 IPR011009 -
Ssu6g0787 382 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
Ssu6g0787 382 PANTHER OS01G0750732 PROTEIN 1 380 - -
Ssu6g0787 382 Pfam Protein tyrosine and serine/threonine kinase 45 313 IPR001245 GO:0004672|GO:0006468
Ssu6g0787 382 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 1 380 - -
Ssu6g0787 382 MobiDBLite consensus disorder prediction 339 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0787 Ssu-Chr6 12468291 12471358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0787 1 313 Trihelix Transcription Factor Family AT1G70460 48.265 3.75e-96 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Ssu6g0787 PK_Tyr_Ser-Thr 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0787 - - gmx:100783365 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0787 6 12468291 12471358 Ssu6g0787 6 12468291 12471358 ECH