Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0786 atggCACTTCCCTCCCCTGCCAAAATACTAATTGGCCTCTCCTTAGACCTAGATGACAGCAAGGAGCTTCTCTCATGGGCAATAAGAGTTCTAGCCAATCCAAACGACACCATTGTGGCCGTGCATGTTCTTGTTGCTGAGCGTAAGAAGAAGCGTGTCCCAGTCAGAAGAAGGCAATCACAACTTAGGCAAGCAAAAGCATATGTTATATCTGTGCTTGGAGAATTTGCAGAGACCTGTTGGTCTAAGCAGGTTAATTTGGAGGCCAGGGTGGCACTCAATTCCACAGTTGGTGAAGGTTTAGTGGAGGAAGCCAAGTCCATCAATGCTGATTTTCTTCTTATTCGTGGCTCAAGAAACCGAACAAATAAaaGTGGAACTTCTAAAGGAATTACCGAGTATTGCTTTGAGCATGCGCATGAAGGATGTACAATGGTCTCAGTTGGGAGACGTACAAAGGCAGATCAAAGTGCCAATTCAAACTCAACACGGTTTCAAGTAGATAATAAACGACCAAGTTCAAGATGGTTTAAGAAGGATAAGCGATGTGACAAGGCTACCTCCCCTGTTCTGGAGGATTATATCTCAGGAACCAAGGCACAGAACCGTTCACCTAGAACGGTACTAGATGGTTTAGAGGGACAATCGAACAGCACAGAAGATGATACCTTTAGTACTAGGGTCTCAAGTACCACTTGTACCCCATCATTGGATTCTAAGATTAAGAGTCGATCCAAGGTAAGAAAACCACAGTTCCCATTCAGGTTCATAGTCTCATTCCTCGCTTCACCATTTAGAAGGAAAAGCTTTAACATATCCAAAAATGAAAAGCGTCAGCCTTTGTTGAAGTGCTTCAGCTATGAACAGATATCCAATGCTACCAACGACTTCCACCAAGataatttggTTGGACGAGGTGGGTACTCGGAAGTATACAAAGGTGATCTTTCAGATGGACGAACCATTGCTGTGAAGAGGTTGGCCAAGGACAAAAAGGATCCTAACAAGGAAAAAGAGTTCCTTATGGAGTTGGGGGTTATTGGACATGTCTGCCATCCTAATACTGCAACTTTAGTGGGCTGCTGCGTTGAAGATGGGCTATATCTGATTTTCAATTACTCTCAAAATGGAAATTTGGCAACTGCATTGCATGGTAAAGGAGGAGATTCACTTGACTGGCCAATCAGATACAAAATTGCTATTGGTATTGCAAGGGGTCTCCATTATCTCCATAAATGTTGCAAACACCGAATAATTCATCGTGACATTAAAGCCTCTAATGTTCTTCTGGGTCCTGATTACGAACCACAGATTACGGATTTTGGGCTTGCAAAGTGGCTTCCTAACAAGTGGACTCACCATGCTGTGATCCCCGTAGAGGGCACATTTGGATACTTAGCGCCAGAGTACTTTATGCACGGAATCGTGGACGAGAAAACAGATGTTTTTGCATTTGGAATTTTACTTTTGGAGATTGTAACTGGACGGAGACCTGTTGATTCATCGAAGCAAAACCTTCTCCTATGGGCAAAGCCTCTGATGGAATCAGGGAATATTGCTGAGCTAGCTGATCCAAGATTGGAAGGTAAATATGATGAAGAGCAACTGTATAGGGTAGTGCTAACGGCTTCATTCTGTGTGAGACAAACTGCCACGTGGCGTCCCCCAATGAGCGAGGTGTTAGAGCTGCTAACCAGTGGCCAAGAGGTGAGGTTGGGAAGAGCTGGAGGATCCCAAAGTTCACTTCTGATGAATTGGATGATTACTCTATGGCTTTCGGATATGATGTACCCTCAGACATATCTTTGGAGGATTATTTGTGAGAATGAAATATAG 1836 0.4346 MALPSPAKILIGLSLDLDDSKELLSWAIRVLANPNDTIVAVHVLVAERKKKRVPVRRRQSQLRQAKAYVISVLGEFAETCWSKQVNLEARVALNSTVGEGLVEEAKSINADFLLIRGSRNRTNKSGTSKGITEYCFEHAHEGCTMVSVGRRTKADQSANSNSTRFQVDNKRPSSRWFKKDKRCDKATSPVLEDYISGTKAQNRSPRTVLDGLEGQSNSTEDDTFSTRVSSTTCTPSLDSKIKSRSKVRKPQFPFRFIVSFLASPFRRKSFNISKNEKRQPLLKCFSYEQISNATNDFHQDNLVGRGGYSEVYKGDLSDGRTIAVKRLAKDKKDPNKEKEFLMELGVIGHVCHPNTATLVGCCVEDGLYLIFNYSQNGNLATALHGKGGDSLDWPIRYKIAIGIARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVIPVEGTFGYLAPEYFMHGIVDEKTDVFAFGILLLEIVTGRRPVDSSKQNLLLWAKPLMESGNIAELADPRLEGKYDEEQLYRVVLTASFCVRQTATWRPPMSEVLELLTSGQEVRLGRAGGSQSSLLMNWMITLWLSDMMYPQTYLWRIICENEI 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0786 611 Gene3D HUPs 4 148 IPR014729 -
Ssu6g0786 611 Gene3D Phosphorylase Kinase; domain 1 261 373 - -
Ssu6g0786 611 PANTHER OS08G0249100 PROTEIN 6 576 - -
Ssu6g0786 611 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524
Ssu6g0786 611 ProSiteProfiles Protein kinase domain profile. 297 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0786 611 PANTHER OS08G0249100 PROTEIN 6 576 - -
Ssu6g0786 611 CDD USP_Like 8 140 - -
Ssu6g0786 611 Gene3D Transferase(Phosphotransferase) domain 1 375 574 - -
Ssu6g0786 611 SUPERFAMILY Protein kinase-like (PK-like) 271 564 IPR011009 -
Ssu6g0786 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Ssu6g0786 611 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 6 141 - -
Ssu6g0786 611 SMART serkin_6 297 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0786 611 Pfam Protein kinase domain 297 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0786 611 Pfam Universal stress protein family 8 145 IPR006016 -
Ssu6g0786 611 MobiDBLite consensus disorder prediction 208 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0786 Ssu-Chr6 12460178 12463660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0786 285 560 Trihelix Transcription Factor Family AT1G68690 45.614 3.48e-73 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Ssu6g0786 Pkinase 5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0786 - - ccaj:109809416 1078.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0786 6 12460178 12463660 Ssu6g0786 6 12460178 12463660 ECH