Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0785 ATGTGTGAGGTGTGCGAGCAGGCGCCCGCGGCTGTCACGTGCAAGGCAGACGCCGCAGCACTCTGCGTCACGTGCGACTCCGACATCCACTCCGCCAACCCCCTCGCGAGCCGCCACGAGCGCGTCCCCGTCGAGCCCTTCTTCGACTCCGCCGAGTCCATCGTCAAGGCCTCCGCCGCCGCCTCCTTCGGCTTCATCGTCCCCACCGACGACGCCTCCATCTCCGACGCCTTCGCCCCCGACGCCGCCGCCGCCGCGTGGCTCATTCCCGACCCCAATTTCGGCTCCAAACTCATCGACACCCCAGACATCAAGTCCAAGGAGATGTTCTTCTCCGAAATGGACCCCTTCCTCGATTTCGATTACTCAAACTCCTTCCAAAACAACAACAGCGCCGGAAACGACAGCGTCGTTCCAGTTCAAACCAAACCCTCTCTCCCTCCTCCGCTCCTGAATAATCACCACCACCAGTCAGAGGGTTGCTTCGACATCGATTTTTGCCGATCGAAGCTATCCTCCTTTAACTACCCGTCACAGTCTCTTAGCCAAAGCGTTTCGTCGTCGTCGCTTGATGTTGGAGTGGTGCCAGATGGGAACACGGTGTCGGAGATGTCGTACTCGTTTGGTCGGAATAGTTCGGATTCGAGTGGGATTGTTGTGTCCGGGGGTAGTGGGGGGCAAGGTGCGACACAGTTGTGTGGGATGGATCGGGAAGCGAGGGTGCTGCGATACagggagaagaggaagaatcGAAAGTTCGAGAAGACTATTCGATATGCTTCGCGAAAGGCTTATGCGGAAACCCGGCCCAGGATAAAAGGCCGGTTCGCGAAGCGAACCGAAATTGACTCGGACGTGGACCGCCTCTATAGCCCTGCTGCCGCTGCGCTCATGCTGGACACTCCGTACGGTGTCGTACCGTCGTTTTAG 930 0.5774 MCEVCEQAPAAVTCKADAAALCVTCDSDIHSANPLASRHERVPVEPFFDSAESIVKASAAASFGFIVPTDDASISDAFAPDAAAAAWLIPDPNFGSKLIDTPDIKSKEMFFSEMDPFLDFDYSNSFQNNNSAGNDSVVPVQTKPSLPPPLLNNHHHQSEGCFDIDFCRSKLSSFNYPSQSLSQSVSSSSLDVGVVPDGNTVSEMSYSFGRNSSDSSGIVVSGGSGGQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVDRLYSPAAAALMLDTPYGVVPSF 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0785 309 CDD Bbox1_BBX-like 2 44 - -
Ssu6g0785 309 Pfam B-box zinc finger 1 44 IPR000315 GO:0008270
Ssu6g0785 309 ProSiteProfiles Zinc finger B-box type profile. 1 44 IPR000315 GO:0008270
Ssu6g0785 309 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 1 309 IPR045281 GO:0009909
Ssu6g0785 309 SMART bboxneu5 1 44 IPR000315 GO:0008270
Ssu6g0785 309 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 1 309 - -
Ssu6g0785 309 Pfam CCT motif 237 279 IPR010402 GO:0005515
Ssu6g0785 309 ProSiteProfiles CCT domain profile. 237 279 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0785 Ssu-Chr6 12437508 12438802 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0785 1 309 C2C2-CO-like Transcription Factor Family AT5G57660 58.934 2.79e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Ssu6g0785 zf-B_box 6.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0785 - - gmx:100805693 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0785 6 12437508 12438802 Ssu6g0785 6 12437508 12438802 ECH