Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0779 ATGGGGTTTGGAAAAAGAATTGGTAAGTATCAGCTTGGTAGGACAATAGGAGAAGGTACATTCTCTAAGGTTAAGCTGGCAGTCAATGGCAACAATGGTCAGAAGGTTGCGGTCAAGGTCATCGATAAGCATATGATCCTGGAAAACAATCTTAAGAATCAGGCAAACCTCATCCTTGTTAAAAGAGAGATCAGAACAATGAAACTTCTGCATCATCCCAATATAGTTAGAATTCACGAGGTTCTTGGCTCAAAAACGAAGATATACATCGTGATGGAATATGTGTCAGGAGGACAACTATTAGACAAGATGTCCTGTGGCGAGAAGTTGAATGAATTTGAGGCAAGAAAACTATTCCAGCAACTTATTGACGCCCTGGACTACTGCCATAACAAAGGGGTTTGTCATCGAGATCTCAAGCCAGAAAACTTGCTTCTTGACAACAAGGGAAATCTCAAAGTGTCTGATTTTGGATTAAGTGCATTGCAAAAGCGTAATGATGTCTTAACCACGCGGTGTGGATCCCCGTGCTATGTGGCACCTGAGCTGCTATTGGGCAAGGGGTATGATGGAGCAGCTGCTGATGTTTGGTCATGTGGGGTGATCCTTTTTGAATTACTTGCAGGCTATTTACCATTTAACGACCAGAACTTGATGAGCTTATATGGAAAGATATGGAAGGCAGAATATAAATGCCCCGCATGGTTTACTCAGAGTCAAAAGAAACTAATTGCCAAAATACTTGAACCACGTCCTGTAAAGCGGATATCTATAGCAGATATTATTGAAGATCAGTGGTTTCACACAGATTACAAGCCTGCTTTTGCATCTGAATTTGATCAGAACATTAACTTGGATGATGTTAATGTTGCTTTCAATTCAATTAAGGAGAATATCACAGAGTCAATGATACCCAAGTCCTCAAGTTTCATTAATGCGTTTCAACTAATAGCCATGTCTAAGGACCTTGATCTATCTGGCCTTTTTGAAGAACAGGAtgaaaaaaaacagaaaacaaggCTAGGATCCAAACACACTATCAAtgaaacaatagaaaaaatagaagctGCTGCAACCGATGTAAGACTGTCAGTAGAGAAAATGAATAACTTTAAGATAAAAATGCAACCGAAACAGATAATGACCAGGTGTCCTAGATCATATTCATACCTATCAGCCGAGGTGATTGAAGTTGCTCCAACTCATTGTGTTGTAGAAATATCAAAATCTGCAGGAGATCTAAGAATGTACAACAAATTTTGTGAAAGTCTATCAAATTTGTTGAAACAAAAACCTGGTGTGTCATCACAAAGCCAAGATTCTGTAGATCTATGCACCACTAACAGAAAAAAGCAAGATGCTGGATGTTTCTCGGGAGAATTGCAGTTAAGGAATTCTTGGAAGTGGTTCACAATGTTcaaaaaatggttaaaggACCTATGGACAACTGATTCCGGACTTCAGTTGTGA 1470 0.3803 MGFGKRIGKYQLGRTIGEGTFSKVKLAVNGNNGQKVAVKVIDKHMILENNLKNQANLILVKREIRTMKLLHHPNIVRIHEVLGSKTKIYIVMEYVSGGQLLDKMSCGEKLNEFEARKLFQQLIDALDYCHNKGVCHRDLKPENLLLDNKGNLKVSDFGLSALQKRNDVLTTRCGSPCYVAPELLLGKGYDGAAADVWSCGVILFELLAGYLPFNDQNLMSLYGKIWKAEYKCPAWFTQSQKKLIAKILEPRPVKRISIADIIEDQWFHTDYKPAFASEFDQNINLDDVNVAFNSIKENITESMIPKSSSFINAFQLIAMSKDLDLSGLFEEQDEKKQKTRLGSKHTINETIEKIEAAATDVRLSVEKMNNFKIKMQPKQIMTRCPRSYSYLSAEVIEVAPTHCVVEISKSAGDLRMYNKFCESLSNLLKQKPGVSSQSQDSVDLCTTNRKKQDAGCFSGELQLRNSWKWFTMFKKWLKDLWTTDSGLQL 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0779 489 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Ssu6g0779 489 Pfam NAF domain 309 367 IPR004041 GO:0007165
Ssu6g0779 489 Gene3D Phosphorylase Kinase; domain 1 3 96 - -
Ssu6g0779 489 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Ssu6g0779 489 CDD CIPK_C 312 430 - -
Ssu6g0779 489 Gene3D Kinase associated domain 1, KA1 306 430 - -
Ssu6g0779 489 PANTHER SERINE/THREONINE KINASE 6 437 - -
Ssu6g0779 489 Pfam Protein kinase domain 10 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0779 489 SMART serkin_6 10 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0779 489 ProSiteProfiles Protein kinase domain profile. 10 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0779 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Ssu6g0779 489 SUPERFAMILY Protein kinase-like (PK-like) 6 268 IPR011009 -
Ssu6g0779 489 Gene3D Transferase(Phosphotransferase) domain 1 97 294 - -
Ssu6g0779 489 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 21-RELATED 6 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0779 Ssu-Chr6 12283134 12293356 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0779 92 428 CBL-interacting serine-threonine protein kinases AT5G57630 62.537 1.51e-147 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu6g0779 Pkinase 1.7e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0779 - - gmx:100786097 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0779 6 12283134 12293356 Ssu6g0779 6 12283134 12293356 ECH