Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0773 ATGGGTAGAGCTCCATGCTGTGACAAGGCCAACGTGAAGAAAGGACCATGGTCTCCCGAAGAGGATGCTGCACTTAAAGCCTACATTGAAAAGAATGGAACAGGTGGCAATTGGATTGCTCTTCCTCAGAAAATTGGGCTCAAGAGATGTGGAAAGAGTTGCAGACTTAGGTGGTTAAATTACTTGAGACCTAATATCAAACATGGAGGATTTACCGAAGAAGAAGACAACATCATCTGCAGCCTTTACATTAGCATTGGTAGCAGGTGGTCCATAATTGCTGCTCAGTTACCTGGAAGGACAGATAACGACATCAAGAACTATTGGAACACTAGGTTGAAGAAGAAATTGCTTGGGAGGCGCAAACAATCTAACTTCAACACAAAAGACACAAATGGAATAGAGGAGAGCTCTTATTCAAATGCCCTAAGCAGCTCAGCTCTTGAAAGACTCCAACTGCACATGCAACTTCAAAGCCTCCAGAACCCTTTCTCTTTCTACAATAACCCTGCGCTGTGGCCTAAGTTGCATCCTTTCCAAGAAAAGATGATCCAGAGCCTGCAATCTTTGAATGATGGCTCTAACCCCGTGATGCAAAATGCTTTGCCTTCCCCACTTGTCGAACAAGGACAAAAGGATGAGTTCTACAAGCCTCAACAAGATGGTGCAAAGATCAATAACCCACAGGTTCATCTTTTGGAGAATATTCCTTTGAGTAACAGTGAAGTTCCCTTTGTTGCTTCTGGGAGTAACAGTAATCCAATGCACCCAAGTCTTGCACCAAGAGCTGAGGCTGTTGAGCAGATTAATAACGTGGGACTTCAGCAACTTGGTGCACTGCAAACTGAACTAGATGACATTCTCAACAACAGAACAATGGGTTGTGTGCCACAGGAAGACCATGGTATGGCTGGATTTGATTGTTTCAGAGAGATGAATGGCTCAAAGGACAGCTTGATTTGGTGGTCCAATGATTCTGATACCAAATCAGCATCCTCAAATTCCTGGGATTCATCAACTCCAGCTCTTCTAACACAAGGGATGTTCCAAGATTATGAAATGGGTTACAGTCTGTAG 1077 0.4373 MGRAPCCDKANVKKGPWSPEEDAALKAYIEKNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSNFNTKDTNGIEESSYSNALSSSALERLQLHMQLQSLQNPFSFYNNPALWPKLHPFQEKMIQSLQSLNDGSNPVMQNALPSPLVEQGQKDEFYKPQQDGAKINNPQVHLLENIPLSNSEVPFVASGSNSNPMHPSLAPRAEAVEQINNVGLQQLGALQTELDDILNNRTMGCVPQEDHGMAGFDCFREMNGSKDSLIWWSNDSDTKSASSNSWDSSTPALLTQGMFQDYEMGYSL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0773 358 CDD SANT 71 113 IPR001005 -
Ssu6g0773 358 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Ssu6g0773 358 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Ssu6g0773 358 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Ssu6g0773 358 CDD SANT 16 62 IPR001005 -
Ssu6g0773 358 Gene3D - 7 68 - -
Ssu6g0773 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Ssu6g0773 358 SMART sant 13 64 IPR001005 -
Ssu6g0773 358 SMART sant 67 115 IPR001005 -
Ssu6g0773 358 Gene3D - 69 140 - -
Ssu6g0773 358 PANTHER OS09G0431300 PROTEIN 1 315 - -
Ssu6g0773 358 PANTHER OS09G0431300 PROTEIN 1 315 - -
Ssu6g0773 358 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Ssu6g0773 358 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Ssu6g0773 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0773 Ssu-Chr6 12233907 12235316 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0773 1 198 MYB Transcription Factor Family AT5G57620 74.757 1.33e-103 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu6g0773 Myb_DNA-binding 1.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0773 K09422 - gmx:778083 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0773 6 12233907 12235316 Ssu6g0773 6 12233907 12235316 ECH