Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0772 ATGGATAGTCCAATTCGATCGCCGGCTACCGGTTCAGGTTCCGGTGAAGATAGCCGGCGTGTTAAGTTCTTGTGCAGCTTTCTGGGGAGCATAATGCCTCGTCCCCAGGATGGGAAGCTGCGTTATGTTGGCGGCGAGACGCGAATTGTGAGTGTTCCGAGAGATATTAGCTATGAGGAGTTGATGGGGAAGATGAGAGAGCTGTATGAGGGGGCTGCTGTGTTGAAGTACCAGCAGCCTGATGAGGATCTTGATGCTCTTGTTTCTGTTgtcaatgatgatgatgtggtTAACATGATGGAGGAGTATGACAAGTTGGGGTCAGGGGATGGATTCACTAGGCTCAGGATTTTTTTGTTCTCGCAATCCGAGCAGGATGGTTCCTCGCATTTCATTGATGGGGATGATTCTGAGAGGAGGTATGTTGACGCGTTGAATAGTTTAAACGATGCTTCTGACTTTAGGAGGTTGCAACAAGGGGAGTTTCCTATGATTAGCCCTGTTGAGGATATCCATGTGGCTGATCAGTACTTTAATCCAATCAGTGTGGAAAGTGGGATTCATAGTCAGAGGAGTGGGGACCTTTCTATGTCACAGTACAATATGCATCATCTTGCGGTCCAGCACCCGCAGACTATGGGCCAGAGGTATAATGAAATGGATGCTCCTTGGAATCCTGCCTATTACTCTCCTAGACATCATGGTCTGCATGACTCAAGATCGTTGGTTGAATTTCCATCGTCTCCTTCTGGTACGAGGTACCGTATGCCATTTCCCGAATTGCCAGATAAGTGCATTGATAGAGTGCCGGAAGAGTATGCTCGACATCATGTAAATCATCATCCTGTGTACGACAGTCAACCGCAGTATTCTGAAAATGTTTTGTGGGTGCAAACTGGAGCAGCACATGGCGAAAAGTCAGCTTTTCCAGGCAATATTCTTCACGGTCCTCATGTTCTTGATGGGAGCAGTATATGTGAGCAGTGTCGCATGGGTTTTCAGAGAGGTCAACCACATGTGGAGCATTCTAATATTAGTAATGGACTTCCACCGGTTGCTAATCCCTGTGCAGAATGCCCACCAAAGAGGGATACTTTCACAGTGAATGCTGATGCAAAGTTACATCCCGCAATTTATCCCAATGAACCTAATAATGATCTTAGGCCTGTTTATACTGATACTCAGAATCACGACAGAGGATGGGGTTTGCAGCATCCGACAGCTGCTCGGGTTGAGGAATCAAGAGGACATGTCTCTGGATCTGGAAGAGTGAGTGATGTTCCTGTTGTAAATTTCTCTCTTGGACATGGTAGTGTGACTGATGGACATACCTTGTCTGCCAATTATGTTCATCAGCAGGCTGGACCTGAATTGGGGCCCGAACTGTTCCCTGACCAAACCGTGACTGCTATTCCACATATACAAATTCCTCCACTGGAAGAAAGCAATGTGCGTTATGGAAATTCACCTTCTTCGTATGGAGTAGATAGTAATTATGCTGTGCCTCGTGGACATCCACCTGGTTTCTGGAGAAACACTCCAATACCTGTTCATATTGGACCATCTTATGAGGCAGCTACTCCACATCAGCAGGTGAATGGTATGATAAATGCTGGATTAATTAGGGGAGAGGGCAGTCCAGGATTTATCATTGGACCAGATAGTCAAAATCATTGGGTTGATTCCTCACAGAAATTGACAGGACATGATGTTACAGCCATCCCAGAATATCCATATGCACATGCTCTGAAGTTGAATCCAATGCCCCTTGGTCAAGAAAATCAACACCCAGTAACTGTAGATACCATTCATCACCCACAGGACATGAATGCTGGTACCTGCTTGGAACCTGTGCAGCTGCCAAAATCATCTTTTAATATGGTTCACAATAATGAGGTTTTAAGAAATGATACTCATTTGACTGAAGCAAAGAGTTTTGAATCTAATAGTTTGCTTGGAGAAGGAATAGTGGTAAAAATTGAGGACAAGGTTGATAACTCTGATGTGCAGACTGTATCTTTTTCAGAGCAAAATAAAATTGCTGAGAATGCATGTGAAGCTGTTGCTTCTGTTGAGTCTAATAGTTCAAAGTCAAAACCTGAAGCAGACTGTGGGCATGTTCCAGAAGATTCTAAGCATTTAGTTGATCAATTCAGCTTCTTGCCTGAGTTGATTGCTTCTGTAAAAAAGGCTGCATTAGAAGGTGCCAAGGAGGTGAAAGCTGCAGCTGTTGAGCATGCCAATTCTCAAAATTGCAATTCAGatacaaaagaagaaacaaaaaatgaagtaGAACCAGTGAATGCTCATGGTGATTTAGAATTGGACTCTGAAAATGACCTTGTAGATACTTCTAAAATTGAGCCTACAAGGGCTGAGGAAGAAGCAATTGCTAGGGGATTGCAGactattaaaaatgatgatttggAGGAGATACGTGAGCTTGGTTCTGGAACCTATGGAGCTGTTTATCATGGGAAATGGAAAGGTTCTGATGTTGCCATTAAGAGAATAAAAGCCAGTTGTTTTGCTGGAAGGCCATCTGAAAGAGCAAGATTGATCGCAGATTTCTGGAAGGAAGCATTGATGTTGAGTTCATTGCATCATCCAAATGTTGTCTCCTTTTATGGCATTGTTCGTGATGGACCTGACGGTTCTTTAGCAACAGTCACAGAGTTCATGATTAATGGATCTTTGAAACAGTTCTTGCATAAGAAAGATAGAACAATAGATCGTCGTAAGAGGCTCATAATAGCCATGGATGCTGCATTTGGGATGGAGTATTTGCATGGAAAAAACATTGtgcattttgatttgaaatgTGAGAATCTATTGGTCAACATGAGAGATCCTCAACGGCCTGTCTGCAAGATTGGTGATTTGGGTTTATCAAAGGTTAAACAGCACACTCTAGTGTCTGGTGGAGTACGGGGGACTTTGCCATGGATGGCACCAGAACTTCTTAGTGGGAAAAGCAATATGGTGTCAGAGAAGATTGATGTCTACTCATTTGGAATAGTCATGTGGGAATTACTCACAGGGAATGAACCCTATGATGATATGCATTGTGCTTCAATAATAGGAGGAATTGTGAATAACACTTTACGTCCTCAAATCCCAACATGGTGTGATCCTGAGTGGAAGTCTCTAATGGAAAGTTGTTGGGCTTCTGATCCTGTAGAAAGGCCATCATTTTCAGAAATTTCCAAGACGCTGAGGAGTATGGCTGCTTCAATGAATGTGAAATAG 3249 0.4257 MDSPIRSPATGSGSGEDSRRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVPRDISYEELMGKMRELYEGAAVLKYQQPDEDLDALVSVVNDDDVVNMMEEYDKLGSGDGFTRLRIFLFSQSEQDGSSHFIDGDDSERRYVDALNSLNDASDFRRLQQGEFPMISPVEDIHVADQYFNPISVESGIHSQRSGDLSMSQYNMHHLAVQHPQTMGQRYNEMDAPWNPAYYSPRHHGLHDSRSLVEFPSSPSGTRYRMPFPELPDKCIDRVPEEYARHHVNHHPVYDSQPQYSENVLWVQTGAAHGEKSAFPGNILHGPHVLDGSSICEQCRMGFQRGQPHVEHSNISNGLPPVANPCAECPPKRDTFTVNADAKLHPAIYPNEPNNDLRPVYTDTQNHDRGWGLQHPTAARVEESRGHVSGSGRVSDVPVVNFSLGHGSVTDGHTLSANYVHQQAGPELGPELFPDQTVTAIPHIQIPPLEESNVRYGNSPSSYGVDSNYAVPRGHPPGFWRNTPIPVHIGPSYEAATPHQQVNGMINAGLIRGEGSPGFIIGPDSQNHWVDSSQKLTGHDVTAIPEYPYAHALKLNPMPLGQENQHPVTVDTIHHPQDMNAGTCLEPVQLPKSSFNMVHNNEVLRNDTHLTEAKSFESNSLLGEGIVVKIEDKVDNSDVQTVSFSEQNKIAENACEAVASVESNSSKSKPEADCGHVPEDSKHLVDQFSFLPELIASVKKAALEGAKEVKAAAVEHANSQNCNSDTKEETKNEVEPVNAHGDLELDSENDLVDTSKIEPTRAEEEAIARGLQTIKNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFAGRPSERARLIADFWKEALMLSSLHHPNVVSFYGIVRDGPDGSLATVTEFMINGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGIVMWELLTGNEPYDDMHCASIIGGIVNNTLRPQIPTWCDPEWKSLMESCWASDPVERPSFSEISKTLRSMAASMNVK 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0772 1082 ProSitePatterns Protein kinases ATP-binding region signature. 815 836 IPR017441 GO:0005524
Ssu6g0772 1082 Pfam PB1 domain 36 121 IPR000270 GO:0005515
Ssu6g0772 1082 PANTHER - 8 1082 - -
Ssu6g0772 1082 CDD PB1_UP2 24 120 - -
Ssu6g0772 1082 CDD STKc_MAP3K-like 815 1072 - -
Ssu6g0772 1082 Pfam Protein tyrosine and serine/threonine kinase 810 1072 IPR001245 GO:0004672|GO:0006468
Ssu6g0772 1082 Gene3D - 39 123 - -
Ssu6g0772 1082 ProSitePatterns Serine/Threonine protein kinases active-site signature. 934 946 IPR008271 GO:0004672|GO:0006468
Ssu6g0772 1082 SUPERFAMILY Protein kinase-like (PK-like) 801 1071 IPR011009 -
Ssu6g0772 1082 SMART serkin_6 809 1075 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0772 1082 Gene3D Phosphorylase Kinase; domain 1 795 894 - -
Ssu6g0772 1082 SMART PB1_new 35 120 IPR000270 GO:0005515
Ssu6g0772 1082 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 8 1082 - -
Ssu6g0772 1082 SUPERFAMILY CAD & PB1 domains 37 127 - -
Ssu6g0772 1082 PRINTS Tyrosine kinase catalytic domain signature 1043 1065 IPR001245 GO:0004672|GO:0006468
Ssu6g0772 1082 PRINTS Tyrosine kinase catalytic domain signature 928 946 IPR001245 GO:0004672|GO:0006468
Ssu6g0772 1082 PRINTS Tyrosine kinase catalytic domain signature 999 1021 IPR001245 GO:0004672|GO:0006468
Ssu6g0772 1082 PRINTS Tyrosine kinase catalytic domain signature 891 904 IPR001245 GO:0004672|GO:0006468
Ssu6g0772 1082 ProSiteProfiles Protein kinase domain profile. 809 1076 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0772 1082 Gene3D Transferase(Phosphotransferase) domain 1 895 1082 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0772 Ssu-Chr6 12219130 12224531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0772 16 1082 MAP Kinase Kinase Kinase AT5G57610 55.122 0.0 1071
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Ssu6g0772 PK_Tyr_Ser-Thr 3.4e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0772 - - gmx:100779077 1937.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0772 6 12219130 12224531 Ssu6g0772 6 12219130 12224531 ECH
Ssu6g0772 6 12219130 12224531 Ssu1g1785 1 44628396 44634513 PCT