Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0769 atgatttattttgttataccTGTATGTCTCTGCATTTGGCTCTTAATTGATTCAGTAAATACGGATGTGAAACAGGTCAGTGAAGAAGTGGAGCGTGCTTTGGCAAAGTTAGGTCCTGCAAGACTTAGTGGAAGGTCTCCTCCTAAAATGATTGAAGGCCCTGATGGTAGAAACTTGCAGCTGCAATTTAGGTCCCGGCTGTCTCTTCCCCTATTCACAGGAGGAAAAGTGGAAGGCGAGCAGGGGGCTCCAATTCATGTTGTTCTGATTGATGCCAATAGTGGAAATGTTGTAACATCTGGACCAGAATCCTGTGTTAAACTTGATGTGGTTGTCCTTGAAGGCGACTTTaacaatgaagatgatgaagattGGACTCAAGAAGATTTTGAAAGCCATGTGGTAAAAGAACGTGAAGGAAAGAGACCTTTGTTGACTGGGGACCTGCAAGTGACACTCAAGGAAGGAGTTGGAACATTAGGGGAACTGACATTTACAGATAATTCAAGCTGGATAAGGAGCCGTAAATTCAGGCTTGGCCTGAGGGTTGCATCAGGTTTTTGCGGGTCCTTACGCATTCGTGAAGCTAAGACAGTGGCTTTCACAGTTAAAGATCATAGAGGAGAATTATATAAGAAGCATTATCCTCCTGCATTGACTGATGAAGTGTGGAGATTGGAGAAGATAGGCAAGGATGGGTCATTTCACAAGAAGCTGAATAGTGCAGGAATAATCACAGTTGAAGACTTTCTTCGGCTTGTGGTTAAAGATCAACAGAAATTGCGGAATATCCTTGGGAGTGGTATGTCAAACAAGATGTGGGAGGCTCTCTTAGATCATGCAAAGACATGTGTTCTTAGTGGAAAGCTCTATGTTTATTATCCAGAAGATGCAAGAAATGTTGGCGTTATTTTTAACAACATCTATGAGCTGCGTGGCCTTATATCGGGAGAACAATTCGTTTCTGCTGATTGTCTCACAGATAGCCAGAAGGTTTATGTAGATTCATTGGTGAAGAAAGCATATGAAAATTGGGATCAGGTTGTGGATTATGATGGCAAATCACTTGTGAATGCTAACCAAAATAACAGGTCTATTGCATCTGAAAATGAACTTCGTGTTGACTCAATTGATTATGGTAGTGGTTTAGATCATCAACTGCAACTGCCGGCCCTCCCAGTGTCTGTTCCTTCTGAACAGCAAATGAATTCAGGGATACCAGTTGGAGGTTATAATGATAATATGGTAACACGATACCCATCCCAGTCATTGATTTCAAACTCCGGCTCCCGGAGTCAGTTCGATAGCTCATTATATCTGTCTAATGACCAATTAATCAACAATGCTCACCAAACCCAAAGCACTAGAAATGATCATGGCACGGTTGGGTTAGCTCTTGGTCCTCCTCAATCATCGACGTCAGGGTTCCATGCTGGAAGCTCTTCCATTCAGCCATCTACTCTAAATCCTTTTGATGATTGGTCACACAACAGGGACAAGGGGGTTGAAGAATTCTTTTCGGAAGAAGAAATCCGCCTAAGAAGTCATGAGATGCTAGAGAATGAAGATATGCAGCACTTGCTTCGCCTCTTCAGCATGGGGGGTCATGGCTCCATGAGTGCTGAGGATGGCTATTCATTCCCAGCATTCATGCCATCTCCCAATATACCAAACTACGATGAGGATCGCTCTCGCCCAGGCAGAGCTGTTGTGGGATGGCTGAAGATCAAGGCAGCAATGAGGTGGGGCTTCTTTATCAGGAAGATAGCAGCTGAGAAGCGGGCACAGATAGAGGAGTTAGATGAATAG 1809 0.4295 MIYFVIPVCLCIWLLIDSVNTDVKQVSEEVERALAKLGPARLSGRSPPKMIEGPDGRNLQLQFRSRLSLPLFTGGKVEGEQGAPIHVVLIDANSGNVVTSGPESCVKLDVVVLEGDFNNEDDEDWTQEDFESHVVKEREGKRPLLTGDLQVTLKEGVGTLGELTFTDNSSWIRSRKFRLGLRVASGFCGSLRIREAKTVAFTVKDHRGELYKKHYPPALTDEVWRLEKIGKDGSFHKKLNSAGIITVEDFLRLVVKDQQKLRNILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDARNVGVIFNNIYELRGLISGEQFVSADCLTDSQKVYVDSLVKKAYENWDQVVDYDGKSLVNANQNNRSIASENELRVDSIDYGSGLDHQLQLPALPVSVPSEQQMNSGIPVGGYNDNMVTRYPSQSLISNSGSRSQFDSSLYLSNDQLINNAHQTQSTRNDHGTVGLALGPPQSSTSGFHAGSSSIQPSTLNPFDDWSHNRDKGVEEFFSEEEIRLRSHEMLENEDMQHLLRLFSMGGHGSMSAEDGYSFPAFMPSPNIPNYDEDRSRPGRAVVGWLKIKAAMRWGFFIRKIAAEKRAQIEELDE 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0769 602 Pfam Calmodulin binding protein C-terminal domain 289 351 IPR046829 -
Ssu6g0769 602 Pfam Calmodulin binding protein-like N-terminal domain 59 206 IPR046831 -
Ssu6g0769 602 PANTHER OS02G0177800 PROTEIN 23 601 IPR012416 GO:0005516
Ssu6g0769 602 PANTHER CALMODULIN-BINDING PROTEIN 60 B 23 601 - -
Ssu6g0769 602 Coils Coil 16 36 - -
Ssu6g0769 602 Pfam Calmodulin binding protein central domain 219 284 IPR046830 -
Ssu6g0769 602 MobiDBLite consensus disorder prediction 452 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0769 Ssu-Chr6 12142702 12146820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0769 26 597 Calmodulin-binding Proteins AT5G57580 67.698 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0769 - - gmx:100790087 1071.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0769 6 12142702 12146820 Ssu6g0769 6 12142702 12146820 ECH