Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0757 ATGAATTTCCATCCCAATACGTCTCTTCACCTAAGCCACCCAGATGATGGGAATCATCTCAATCTAGATCTTCTTCTTGAgccatcttcttcttcttcatcttcaccTTCACCTATTAGTCCCATTGAGCCCCGGATATTCTCATGCAACTATTGCCAGAGAAAGTTCTATAGCTCTCAAGCGCTAGGGGGTCACCAAAATGCTCACAAGCTTGAAAGGACACTGGCCAAGAAGAGCAGGGAACTGAGTTCAGCCATGCAATCTTATGGAGAACGGGAGCAGCGATCAAACTTCAGTGCTTCACGCCATATTGGTCGTGCTCTTGGGGTTGTGGATAACCAAGGACAAAGTTATGTGAGGCTTGGTGGAAGAAAAGAGTTTAGTTATGGTTCCAAGGAAGGGGTGGCTTCCTGGTCAAGGGCTTATAGTACTTCTGAACATGTTCAGGAGGATATTGGCCAACTTGACTTGTCGTTAAGGCTTTGA 486 0.4342 MNFHPNTSLHLSHPDDGNHLNLDLLLEPSSSSSSSPSPISPIEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELSSAMQSYGEREQRSNFSASRHIGRALGVVDNQGQSYVRLGGRKEFSYGSKEGVASWSRAYSTSEHVQEDIGQLDLSLRL 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0757 161 MobiDBLite consensus disorder prediction 80 95 - -
Ssu6g0757 161 PANTHER BNAC02G44440D PROTEIN 1 161 - -
Ssu6g0757 161 SUPERFAMILY beta-beta-alpha zinc fingers 44 74 IPR036236 -
Ssu6g0757 161 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Ssu6g0757 161 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Ssu6g0757 161 Coils Coil 68 88 - -
Ssu6g0757 161 MobiDBLite consensus disorder prediction 74 98 - -
Ssu6g0757 161 Gene3D Classic Zinc Finger 38 103 - -
Ssu6g0757 161 PANTHER ZINC FINGER PROTEIN JAGGED 1 161 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0757 Ssu-Chr6 12029393 12029878 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0757 1 161 C2H2 Transcription Factor Family AT5G57520 48.503 1.73e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu6g0757 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0757 - - gmx:100778014 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0757 6 12029393 12029878 Ssu6g0757 6 12029393 12029878 ECH