Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0756 atggcacCTCCTCCACAAGAATTCATCTTCCGCTCCAACCTCCCTGACATTCCCATCCCCACCCACCTTCCATTACACTCTTACTGCTTCCAAAACTTGTCCCAATTCCAGCACCGCCCATGCCTCATCGACGGCGACAGCGGCGAGACCCTCACCTACGCTGATGTCGACCTCGCCGCCCGCCGCATCGCCGCCGGCCTCCACAACCTCGGCATCCGGCAGGGTGACGTCATCATGCTCCTCCTCCGCAACTGCCCCCAGTTCGCCCTCGCCTTCCTCGGCGCCTCCCACCGCGGCGCCGTCGTCACCACCGCCAACCCCTTCTACACGCCGCAGGAGCTCGCGAAACAAGCGACGGCGACGAAGACGAGACTCGTCATTACGCAGGCCGCGTACGTCGAGAAAATCAAGAGTTTCGCGGAGAACAACGATGTCATGGTCATGTGCATTGATTCCTCGGAAGACGGGAGCGTTCTAAAATTTTCTACCCTCACTAACGCCGACGAAACGGAAGCCCCCGCCGTTAAGATTAGCCCGGACGACGTCGTTGCGCTGCCGTTTTCTTCTGGCACGTCTGGGCTGCCTAAAGGGGTTATGCTATCGCATAAAAACTTGGTGACCACTGTGGCGCAGTTGGTTGACGGTGAAAACCCGCACCAGTATACTCACAGCGAGGACGTGCTCCTCTGCGTGCTGCCTATGTTTCACATCTATGCGCTCAATTCCATTTTGCTTTGCGGGATTCGAGCCGGTGCGGCCGTGCTCATTGTGCACAAGTTTGACATCACTACCGTCTTGGGGCTCATCGAGAAGTACAAGGTGACGGTGGCGTCGTTTGTGCCTCCCATCATTTTGGCGTTGGTTAAGAGCGGAGAGGCGCATCGATACGACCTGTCGTCTATTCGAGCTGTCATCACTGGCGCGGCACCCTTGGGAGGGGAACTCCAACAAGCCTTGGAGGCTAGGCTACCACACGCCACTTTTGGAcagGGATATGGGATGACAGAAGCAGGACCACTTTCCATTAGCATGGCGTTTGCAAAAGAACCCTCTAAGATAAAATCAGGTGCATGCGGAACTGTAGTGAGAAATGCGGAGATGAAAATCGTGGATACAGAAACGGGTGCTTCCTTTCCAAGAAACAAAGCCGGTGAAATTTGCATAAGAGGCACAAAGGTTATGAAAGGATATCTAAATGACCCAGAGGCTACAGAGAGAACTATAGACAAAGAAGGATGGCTACACACAGGAGATATCGGTTTCATCGACGATGATGATGAACTCTTCATTGTTGATCGGTTAAAGGAATTGATCAAATACAAAGGATTCCAAGTAGCTCCTGCTGAGCTTGAAGCAATGTTGATTGCCCACCCAAACATTTCTGATGCTGCCGTTGTACCCATGAAAGATGAAGCTGCCGGAGAAGTTCCAGTTGCATTTGTTGTAAGATCAAATGGTTCTAAAATCACTGAGGATGAAATCAAGCAATACATTTCACAACAggttctctttttcttttctttttattggagCATGGAGAGTTTAAGGACCggtttaatatttctattaaaattaatatttttttatctattaatactCTATGAAAACAATCCCACCAACATATATTTGGCCATTATCTATTCGAAACGAAAGAAAGAACTAACTAAAATACATATGAAGATCGagtatatttacatataa 1701 0.4815 MAPPPQEFIFRSNLPDIPIPTHLPLHSYCFQNLSQFQHRPCLIDGDSGETLTYADVDLAARRIAAGLHNLGIRQGDVIMLLLRNCPQFALAFLGASHRGAVVTTANPFYTPQELAKQATATKTRLVITQAAYVEKIKSFAENNDVMVMCIDSSEDGSVLKFSTLTNADETEAPAVKISPDDVVALPFSSGTSGLPKGVMLSHKNLVTTVAQLVDGENPHQYTHSEDVLLCVLPMFHIYALNSILLCGIRAGAAVLIVHKFDITTVLGLIEKYKVTVASFVPPIILALVKSGEAHRYDLSSIRAVITGAAPLGGELQQALEARLPHATFGQGYGMTEAGPLSISMAFAKEPSKIKSGACGTVVRNAEMKIVDTETGASFPRNKAGEICIRGTKVMKGYLNDPEATERTIDKEGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISQQVLFFFSFYWSMESLRTGLIFLLKLIFFYLLILYENNPTNIYLAIIYSKRKKELTKIHMKIEYIYI 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0756 566 CDD 4CL 19 505 - -
Ssu6g0756 566 Pfam AMP-binding enzyme C-terminal domain 449 501 IPR025110 -
Ssu6g0756 566 Gene3D - 4 434 IPR042099 -
Ssu6g0756 566 ProSitePatterns Putative AMP-binding domain signature. 185 196 IPR020845 -
Ssu6g0756 566 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 505 - -
Ssu6g0756 566 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 5 505 - -
Ssu6g0756 566 Gene3D - 435 517 IPR045851 -
Ssu6g0756 566 SUPERFAMILY Acetyl-CoA synthetase-like 6 501 - -
Ssu6g0756 566 Pfam AMP-binding enzyme 32 440 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0756 Ssu-Chr6 11990925 11996329 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0756 7 502 Monolignol Biosynthesis Gene Families AT1G51680 65.347 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0756 K01904 - gmx:548034 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0756 6 11990925 11996329 Ssu6g0756 6 11990925 11996329 ECH