Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0754 ATGGAAGAGCAACCTACACAACTCCACGAGGAGTTCATTTTCCGTTCCAAACTCCCCGACATTTACATCCCCACGCATCTCCCTCTCCACACCTACATCTTCCAAAACCTCTCCCAATTCAAAGAGCGTCCCTGCCTCATCAACGGCGCCACCGGCGAGACCTTCACCTACGCCGCCGTCGAGCTCACCGCCCGCAAAGTAGCCGCCGGACTCAGCAAATTCGGCATCGAGCAAGGCGACGtcgtcctcctcctcctccagaACTGCCCCCAATTCGTCTTCGCATTCCTCGGCGCCTCCTTCCGCGGCGCCACCGTCACCACCGCCAACCCCTTCTACACTCCGGCGGAGGTCGCCAAACAAGCCTCGGCCTCCAACTCCAAACTCATCATAACGCAGGCGTCCTACGTGGACAAAGTCAAGGATTTCGCGCGCGACAACGACGTCAGAGTGATGTGCATCGATTCGGCGCCGGAGGGTTACCTTCACTTCTCGGAGTTAACGGAGGCCGACGAGGGCGACGTCCCCGCCGTTAAAATTTCCCCAGACGACGTCGTTGCGCTGCCGTATTCGTCCGGCACCACGGGGTTCCCCAAGGGGGTGATGCTGACGCACAAGGGGCTCGTTACGAGCGTGGCGCAACAGGTGGACGGAGAGAACCCTAATTTGCATTTTCGCTGCGACGATGTGGTGGTGTGCGTGCTGCCGCTTTTCCACATCTACTCGCTCAACTCGGTTTTGCTGTGTTGCCTTCGAGTTGGGGCTGCCGTTTTGATGATGCAGAAGTTTGAGATCGTTGCGCTGCTGGAGTTGGTGCAGAAACACAAGGCGAGCGTGGCGCCGTTTGTGCCGCCCATCGTTTTGGCGATTGCCAAGAGTCCGGATGTGGAGCGATACGACCTGTCGTCGATTCGGATGATTATGTCTGGCGCCGCACCCCTGGGAAAGGAAGTTGAGGATTCTGTCAGGGCCAAGCTTCCCAACGCCACACTTGGAcagGGTTATGGGATGACGGAGGCAGGACCAGTGCTTTCAATGTGCTTAGCGTTTGCAAAGGAGCCATTTGAGGTGAAATCAGGTGCGTGCGGGACCGTCGTAAGAAATGCGGAGATGAAGATCGTTGACCATGAGACTGGCGCTTCGCTTCCCAGGAATCAAGCCGGTGAGATTTGCATCAGAGGCAACCAGATCATGAAAGGTTACCTAAATGATCAAGAAGCCACAGAAAGAACTATAGACAAAGGAGGATGGTTGCACACGGGTGATATTGGATACATCGACGATGATAATGAGCTTTTCATCGTCGATCGGTTAAAAGAGCTTATCAAATACAAAGGATTTCAAGTGGCTCCAGCTGAGCTCGAAGCCATGCTATTTGCTCACCCAAACATTTCTGATGCTGCTGTTGTATCCATGAAGGATGAAGTTGCAGGAGAGGTTCCGGTTGCATTTGTTGTACGATCAAACGGTTCTAAAATCTCCGAGAATGAAATCAAGCAATACATCTCAAAGCAGGTTGTGTTTTACAAAAGAATCAGTAGGGTTTTCTTTGTGGGCTCAATTCCAAAAACACCCTCTGGAAAGATCTTGCGAAAAGACCTCAGGGCAAGGCTTGCAGCCGATCTTGCCGCATTGTGA 1638 0.5263 MEEQPTQLHEEFIFRSKLPDIYIPTHLPLHTYIFQNLSQFKERPCLINGATGETFTYAAVELTARKVAAGLSKFGIEQGDVVLLLLQNCPQFVFAFLGASFRGATVTTANPFYTPAEVAKQASASNSKLIITQASYVDKVKDFARDNDVRVMCIDSAPEGYLHFSELTEADEGDVPAVKISPDDVVALPYSSGTTGFPKGVMLTHKGLVTSVAQQVDGENPNLHFRCDDVVVCVLPLFHIYSLNSVLLCCLRVGAAVLMMQKFEIVALLELVQKHKASVAPFVPPIVLAIAKSPDVERYDLSSIRMIMSGAAPLGKEVEDSVRAKLPNATLGQGYGMTEAGPVLSMCLAFAKEPFEVKSGACGTVVRNAEMKIVDHETGASLPRNQAGEICIRGNQIMKGYLNDQEATERTIDKGGWLHTGDIGYIDDDNELFIVDRLKELIKYKGFQVAPAELEAMLFAHPNISDAAVVSMKDEVAGEVPVAFVVRSNGSKISENEIKQYISKQVVFYKRISRVFFVGSIPKTPSGKILRKDLRARLAADLAAL 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0754 545 Gene3D - 439 543 IPR045851 -
Ssu6g0754 545 SUPERFAMILY Acetyl-CoA synthetase-like 7 540 - -
Ssu6g0754 545 CDD 4CL 23 532 - -
Ssu6g0754 545 Gene3D - 5 438 IPR042099 -
Ssu6g0754 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 538 - -
Ssu6g0754 545 Pfam AMP-binding enzyme 35 444 IPR000873 -
Ssu6g0754 545 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
Ssu6g0754 545 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 8 538 - -
Ssu6g0754 545 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0754 Ssu-Chr6 11937060 11946851 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0754 1 506 Monolignol Biosynthesis Gene Families AT1G51680 70.485 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0754 K01904 - gmx:100779668 951.044