Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0748 ATGGATTCTGACGAGGAGTGTTCAATTGTTCTTGAATTATCTGAAAGGGATCCTTtctttgacaataaaaagAAATTACTACAAAGTAAGGGTTTTAGTCCCAGAGAACGGATATACCTCAGGAGCTCTTCAAAACCTGGCTGGATGAATGGTACTGTGGAGGTGTTACTTCAGATTGCACGAATCATACAATTGAATGAGCTGGAACTTTATTTTGCTGAAGATGATGTATGCACGTCAATGGAGTTTTACAGTCCCAGGAATGAGTTGGAGGCTCTCAATTCAATTGTTTTGCTCACTGACATATCACTTTCTAGTTGTACACATCTCCATTCAAATATCCTGCAAGGGTTACGCCAAACAATTCTTGATTTAATTTCTGATTTTGGGGACAAAAACAGTGTGAAGGGAGTAGTTGAAAAGGACCACAGTTGTGACCAAGAAGAACACCTTGTAGAATGGGGTGAAAGCAATGGTGTAATGACACAGTTAAAAATAGCTTATATTGAAGGAGCCGGTCGGGGTGCAATGGCAAGGAAAGATCTAAAAGTTGGAGACATTGCTGTGGAAATTCCTGTGTCCATTATCATTTCCGAGGAGCTTGTGCATGAAACTGATATGTATGGTGTCTTAAAAGAGATTGATGGCATATCATCTGAGACAATATTGCTATTATGGAGTATGAAAGAAAAGTACAACTgtgattcaaaattcaaaatttactttgatACACTCCCAGAAAAATTTAATACAGGTTTGAGTTTCAGCATTGAAGCAATTACAATGTTAGATGGAACCTTGCTGTTGGAAGAGATAATGCAAGCAAGACAGCACCTGCATGCTCAATATGATGAGTTGTTCCCTGCTCTGTGCAATAATTTTCCTGATATATTTCCACCAGAGCTGTACACATGGGAGAAATTTTTATGGGCTTGTGAACTTTGGTACTCTAATAGCATGAAGATAATGTATTCTGATGGAAAGCTAAGAACATGCTTGATTCCTATTGCTGGCTTTCTTAATCATTCATTGTGCCCACATGTTATGCACTATGGCAAAGTGGATCCTGCAACAAATTCGCTGAAATTTTGTCTATCAAGACCATGCAGATCTGGAGAAGAATGCTGCTTAAGCTACGGCAACTTCTCCAGCTCGCATTTAATTACCTTTTATGGTTTCTTACCACAAGGAGACAACCCGTACGATGTTATTCCGTTAGACATTGACGGTTCTGACGTTGATTCTATTGAGGATATGCCCGTGTCCAACTGGACGACTCACATGGTGCGTGGTACTTGGTTCTCCAAGGATCACAGGATATTCTACTATGGCCTTCCCTCTCCATTATTGGACCATCTTCGGAGATCTCGGAGTCCTATGCTGCGAACGAAGACTTTTTTGCAAGGAAGCTTGGAAAATGAGCTGGAAGTTCTTGAAAATCTCAAAGATATCTTTGATGATATGATGGATTGTATGGGCGAGATCGATCTTGATAACAGAGAAAACTGCAGTTGGGATGAAAAATTGGCcatggattttaaaaatttacaaagacGAATTGCCTATTCTGTTTCAACTTCATGTCACACTGGTATGGACATGTTGAAGAACGAATTATGCAAGTGCATGGCCGAGGACATCCTAGGCTAA 1650 0.3879 MDSDEECSIVLELSERDPFFDNKKKLLQSKGFSPRERIYLRSSSKPGWMNGTVEVLLQIARIIQLNELELYFAEDDVCTSMEFYSPRNELEALNSIVLLTDISLSSCTHLHSNILQGLRQTILDLISDFGDKNSVKGVVEKDHSCDQEEHLVEWGESNGVMTQLKIAYIEGAGRGAMARKDLKVGDIAVEIPVSIIISEELVHETDMYGVLKEIDGISSETILLLWSMKEKYNCDSKFKIYFDTLPEKFNTGLSFSIEAITMLDGTLLLEEIMQARQHLHAQYDELFPALCNNFPDIFPPELYTWEKFLWACELWYSNSMKIMYSDGKLRTCLIPIAGFLNHSLCPHVMHYGKVDPATNSLKFCLSRPCRSGEECCLSYGNFSSSHLITFYGFLPQGDNPYDVIPLDIDGSDVDSIEDMPVSNWTTHMVRGTWFSKDHRIFYYGLPSPLLDHLRRSRSPMLRTKTFLQGSLENELEVLENLKDIFDDMMDCMGEIDLDNRENCSWDEKLAMDFKNLQRRIAYSVSTSCHTGMDMLKNELCKCMAEDILG 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0748 549 CDD SET_LSMT 164 394 - -
Ssu6g0748 549 Pfam SET domain 173 380 IPR001214 GO:0005515
Ssu6g0748 549 SUPERFAMILY SET domain 148 401 IPR046341 -
Ssu6g0748 549 Pfam Rubisco LSMT substrate-binding 15 100 IPR015353 -
Ssu6g0748 549 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 3 545 - -
Ssu6g0748 549 Gene3D set domain protein methyltransferase, domain 1 110 393 - -
Ssu6g0748 549 PANTHER BNAA07G01600D PROTEIN 3 545 - -
Ssu6g0748 549 Gene3D - 2 109 IPR036464 -
Ssu6g0748 549 ProSiteProfiles SET domain profile. 162 380 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu6g0748 SET 5.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0748 K19199 - gmx:100778605 1056.2