Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0742 ATGAACAGTTTTGACCCCCAAAGAAAAGACTTGTTCAAACAGAGCTGGCAAGATAGAAGACAGATCATGGGTGCACcttcaacttcttcttctttggctGTCTATGttggtaacaacaacaacaacaacaactctaGCAACAACAGTATGAACAAGTATAGCAACAAACTCCAAGGCTTCCCTGGGCTTGAGGATGATGATCTTGTCTCCACTGTGGTTCCTGCTGTGACAGTTGTGCTAGAGGGCCGTTCCATCTGCCAACGCATCAGCCTCCATAACCATGCTAGCTACCAAAGCCTCGCCAAGGCCCTACGCCAAATGTTTGTGGAAGATGCTGGAGACAGTGATGATCTTGACCTGTCCAATGCCATTCCCGGTTACCTTATTGCCTATGAAGACATGGAGAACGATCTTCTTCTAGCTGGCGACCTTAGCTGGAAggaTTTTGTACGTGTGGCAAAGAGAATTCGTATACTTCCAGCCAAGGGGAACTCAAGGAAAAAGGTACAACAAGAGGGGCATAAGTGA 528 0.4261 MNSFDPQRKDLFKQSWQDRRQIMGAPSTSSSLAVYVGNNNNNNNSSNNSMNKYSNKLQGFPGLEDDDLVSTVVPAVTVVLEGRSICQRISLHNHASYQSLAKALRQMFVEDAGDSDDLDLSNAIPGYLIAYEDMENDLLLAGDLSWKDFVRVAKRIRILPAKGNSRKKVQQEGHK 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0742 175 SUPERFAMILY CAD & PB1 domains 86 158 - -
Ssu6g0742 175 Gene3D - 70 173 - -
Ssu6g0742 175 Pfam AUX/IAA family 42 159 IPR033389 -
Ssu6g0742 175 PANTHER AUXIN-RESPONSIVE PROTEIN IAA33 1 169 - -
Ssu6g0742 175 MobiDBLite consensus disorder prediction 33 53 - -
Ssu6g0742 175 ProSiteProfiles PB1 domain profile. 73 163 IPR000270 GO:0005515
Ssu6g0742 175 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 169 IPR003311 GO:0005634|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0742 77 171 B3 DNA Binding Superfamily AT1G19220 32.000 4.59e-06 44.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Ssu6g0742 AUX_IAA 5.7e-14 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0742 - - vra:106766495 210.69