Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0737 ATGTATTCTGGTTCAAGCCAGTTCGACGGCAACGCAGCCTTCTCCGGCGGCGGATTCATGCCTTCTCAGGCTACTCAGGGCCCTGACCCTTCCTTCTTTCTCTCCAAGAATCGTGATGCGCAGTCTTTGCTTTCCCTGACAGTGAAGCAGATAAACGATGCATTCCAGTCAATTGATGATAAAACCAATTTGATTGTTGATGGTGTGGACGTTAATAGTATTACTCTTGTAGGAAGGGTGTGCAACAAAGCTGGACGAATTACTGATATTACTTTTGTGCTTGATGATGGTACTGGGAGGATTGAGTGTAATAAATGGCTTCAGGAAGCTGCTGATACAAATGAAGCTGAGGGTATCTTGGATGGAATGTATGTGAGGCTCTATGGACATTTGAAAAGTTTTCAGGGTAAAAAGACCCtaaatgttttctcttttagGCCTGTGACTGACTTTAATGAGATTGCTAACCATTTCATTGAATGCATATATGTGCATCTCTATAATTCCAGGTTACGGACTAGTGTCCCTAATCAGCAACATGTTATGAATTCCACACCAATTACTCCCACAAAAGGTGATCAAGCTCAAGCCGTCCCACCACCAAATCAGTTCTCTGGTCAACATATCAATGGTCAGAAGAGTGTTGAAGAGATGGTCTTAGATGTTTTGCATCTTCCTGCAcacagGGCAAGGGAGGAGGGAGTCCCTCCTGATGTTATTGCACAGCATCTTGGAATTTCTTTGGATAAGCTCAaGCTGCCTATTAAAAATCTTATTGAGGAAAGTGCCATTTATGAAGCTATAGCTGATCACTATAAGTCAGCCATCAATGGTTGA 837 0.4182 MYSGSSQFDGNAAFSGGGFMPSQATQGPDPSFFLSKNRDAQSLLSLTVKQINDAFQSIDDKTNLIVDGVDVNSITLVGRVCNKAGRITDITFVLDDGTGRIECNKWLQEAADTNEAEGILDGMYVRLYGHLKSFQGKKTLNVFSFRPVTDFNEIANHFIECIYVHLYNSRLRTSVPNQQHVMNSTPITPTKGDQAQAVPPPNQFSGQHINGQKSVEEMVLDVLHLPAHRAREEGVPPDVIAQHLGISLDKLKLPIKNLIEESAIYEAIADHYKSAING 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0737 278 PIRSF RPA32 2 276 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ssu6g0737 278 Pfam Replication protein A C terminal 165 270 IPR014892 -
Ssu6g0737 278 PANTHER REPLICATION PROTEIN A-RELATED 4 275 IPR040260 -
Ssu6g0737 278 Gene3D - 35 170 IPR012340 -
Ssu6g0737 278 Gene3D - 206 276 IPR036388 -
Ssu6g0737 278 SUPERFAMILY "Winged helix" DNA-binding domain 210 272 IPR036390 -
Ssu6g0737 278 Pfam OB-fold nucleic acid binding domain 75 146 IPR004365 GO:0003676
Ssu6g0737 278 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 4 275 - -
Ssu6g0737 278 CDD RPA2_DBD_D 74 166 - -
Ssu6g0737 278 SUPERFAMILY Nucleic acid-binding proteins 45 169 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0737 Ssu-Chr6 11682994 11686540 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0737 1 273 Core DNA Replication Machinery Family AT2G24490 43.841 9.13e-76 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0737 K10739 - gmx:100782819 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0737 6 11682994 11686540 Ssu6g0737 6 11682994 11686540 ECH