Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0736 ATGGAAGGAAGTACATGGCGCGAAGAGGCCATATTGAAAGAGTCAAAAGAAAAGGGTTGTGCTGGCAGCAACACGGTGGACACGTCGCCGGAGGCCACCGCCGGCGGAGGAGCGACCAACCTCTCCATATTCACCGGTGGGCCCAAGTTCGAGGACTTCCTGGGCGGTTCCGCCGCAACAGCCACCGCCACCACGTGTGCACCGCCACAGCTTCCGCAGTTCTCCACCGACAACAACCTATACGATTCGGAGCTGAAGACAACACTAGCCGCTTGCTTCCCTCGCGGCTTCGCCGCCGAACCAACCACCGAACCGCAAAAACCCTCTCCCAAGAAAACCGTCGACACCTTCGGCCAGCGCACCTCCATCTACCGCGGCGTCACCCGACATAGATGGACCGGGAGATATGAAGCTCATCTATGGGACAATAGTTGTAGAAGGGAAGGACAAAGTAGGAAAGGAAGGCAagGTGGTTATGACAAGGAAGAGAAGGCAGCCAGAGCTTACGATCTCGCAGCTCTCAAGTACTGGGGTCCAAGTACCACCACCAACTTTCCCATTTCCAACTATGAAAAGGAACTGGAGGAGATGAAGAACATGACCAGGCAAGAGTTTGTTGCTTCTCTACGaagGAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACAAGACACCACCAGCATGGCCGATGGCAGGCGAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTTAgcACCCAAGAAGAAGCTGCGGAGGCCTATGACATTGCAGCCATCAAATTCAGGGGATTAAACGCAGTCACAAACTTCGACATGAGTCGCTATGACGTAAAAAGCATTGCGAATAGCACACTTCCCATTGGGGGTTTATCCAGCAAGAACAAGAACTCCACAGATTCTGTATCTGAGAGCAAAAGCCACGAGGCAAGCCGATCCGACGAACGAGATCCATCATCAGCTTCATCCGTGACCTTTGGATCACAGCAACCTTCAAGCTCTACCTTAAGCTTTGCCATCCCCATAAAGCAAGACCCTTCAGATTACTGGTCCATCCTGGGGTACCATAATCCTCCCCCCCTTGACAACAGTGGCGTCAGGAACACTACTAGTGTCACTACAACTTCTTTTCCATCTTCCAACAATGGCACTGCTAGTGCTACACCCTTCCACATGGACTTCTCAAGTGCCCCCTCAAGTACCGGCAGTGATAACAATGCTGCCGCGTTTTTCAGTGGAGGAGGCATCTTTGTTCAGCAACAAAGTGGTGGTGGAAGTGGAAGCAGtggttcctcttcttctttaagCTGTTCAATCCCATTCGCGACGCCCATCTTTTCTCTGAATAGTAATACTAGTTATGAGAGCAGTGCTGGTTATGGAAACTGGATTGGACCTACCCTGCACACATTCCAAACCCATGCAAAACCAAGTCTCTTTCAAACGCCAATATTTGGCATGGAATGA 1491 0.5057 MEGSTWREEAILKESKEKGCAGSNTVDTSPEATAGGGATNLSIFTGGPKFEDFLGGSAATATATTCAPPQLPQFSTDNNLYDSELKTTLAACFPRGFAAEPTTEPQKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPSTTTNFPISNYEKELEEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSTLPIGGLSSKNKNSTDSVSESKSHEASRSDERDPSSASSVTFGSQQPSSSTLSFAIPIKQDPSDYWSILGYHNPPPLDNSGVRNTTSVTTTSFPSSNNGTASATPFHMDFSSAPSSTGSDNNAAAFFSGGGIFVQQQSGGGSGSSGSSSSLSCSIPFATPIFSLNSNTSYESSAGYGNWIGPTLHTFQTHAKPSLFQTPIFGME 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0736 496 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Ssu6g0736 496 PRINTS Ethylene responsive element binding protein signature 262 282 IPR001471 GO:0003700|GO:0006355
Ssu6g0736 496 Pfam AP2 domain 222 272 IPR001471 GO:0003700|GO:0006355
Ssu6g0736 496 Pfam AP2 domain 123 178 IPR001471 GO:0003700|GO:0006355
Ssu6g0736 496 MobiDBLite consensus disorder prediction 1 16 - -
Ssu6g0736 496 CDD AP2 122 188 IPR001471 GO:0003700|GO:0006355
Ssu6g0736 496 SMART rav1_2 222 286 IPR001471 GO:0003700|GO:0006355
Ssu6g0736 496 SMART rav1_2 123 192 IPR001471 GO:0003700|GO:0006355
Ssu6g0736 496 MobiDBLite consensus disorder prediction 21 36 - -
Ssu6g0736 496 CDD AP2 221 282 IPR001471 GO:0003700|GO:0006355
Ssu6g0736 496 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 91 331 - -
Ssu6g0736 496 MobiDBLite consensus disorder prediction 325 343 - -
Ssu6g0736 496 ProSiteProfiles AP2/ERF domain profile. 222 280 IPR001471 GO:0003700|GO:0006355
Ssu6g0736 496 SUPERFAMILY DNA-binding domain 122 188 IPR016177 GO:0003677
Ssu6g0736 496 MobiDBLite consensus disorder prediction 1 36 - -
Ssu6g0736 496 Gene3D AP2/ERF domain 222 282 IPR036955 GO:0003700|GO:0006355
Ssu6g0736 496 Gene3D AP2/ERF domain 123 188 IPR036955 GO:0003700|GO:0006355
Ssu6g0736 496 MobiDBLite consensus disorder prediction 309 324 - -
Ssu6g0736 496 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 91 331 - -
Ssu6g0736 496 MobiDBLite consensus disorder prediction 295 343 - -
Ssu6g0736 496 SUPERFAMILY DNA-binding domain 221 282 IPR016177 GO:0003677
Ssu6g0736 496 ProSiteProfiles AP2/ERF domain profile. 123 186 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0736 Ssu-Chr6 11657758 11662597 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0736 54 373 AP2-EREBP Transcription Factor Family AT5G57390 63.714 8.78e-138 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Ssu6g0736 AP2 9.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0736 K09285 - gmx:100797828 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0736 6 11657758 11662597 Ssu6g0736 6 11657758 11662597 ECH