Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0735 ATGGCTACGGATTCGTCTTTTGAGGGCCTTGCACTTGATCCTTCTAAGTGCAGTAAATTGAGTATGGAGGAAAAAAGAGAACTTGTATATGAAGTATCTAAGTGGTCGCATGGTGCATCCGAGATGCTCCAGTCATGGAGCCGTCAAGAGATTTTGCAAATATTGTGTGCAGAGAtgggaaaagagagaaagtataCTGGGTTGACAAAgttgaaaattatagaaaatcttctaaaaattgTTTCTGAAAAGAAATCAGGGGGGAATGAAACTGCAACAGACCCTGATCCACATTCTTCTCCTGCACCTGGTCAGAAACCTGCTAAAAGGCAGAGAAAATCTGAGAATCCTTCTCACATACCTGTTCCTGCGACCGGTGTTTCTGTCAATAATGGTGGTGATGTTGTTAATACTACATACTGCAAAAACTCAGCTTGCAAAGCTACCCTTAATCAAGCAGATGCATTTTGCAAAAGATGTTCATGCTGCATTTGTCATCAATATGATGACAATAAAGACCCTAGCCTGTGGTTAATATGTAGTTCTGATAATCCATTTCCTGGTGTTTCTTGTGGCTTGTCATGCCACCTTGAGTGTGCTTTAAAACATGATGGTTCTGGAATTGGAAAAGATGGTGAGCGTCCCGAGCTTGATGGAGGCTTCTACTGTGTCTCTTGTgggaaaataaatgatttacTTGGATGCTGGAGAAAACAACTGATGGTAGCAAAGAATACTAGACGCGTGGATATACTCTGTTATCGTGTCTCCTTAAGCCAAAGACTTTTACAAGGAACTGAAATGTATGAAgaactttataaaattgttgatgAAGCAGTGAAGAAACTTGAACCTGAAGTGGGTCCACTGACTGGGTCACCAGTGAAGATTGGTAGGGGGATTGTGAACAGGCTTTCATCAGGACCTGAGGTTCAGAAACTCTGTGGTTCTGCTCTGGAATCACTTGATTCACTGCTTTCAAAAAGGATCTTGCCTTCATCACCCAATCCAACAATTCTAGATGCCTCCTTGCTGGCTCCAAATATGGTGAGGTTTGAAGATGTCATTGCCACATCCCTAACTATTATTTTGGGTTCTGAAGAACCCTCTGGTGAAAATATTGCTGCTTACACCTTATGGCATCGCAAAGCTGATGACGTGGACTATCCCACGGACCCGACTTGCATCTCGCTTCTACCAAATAGACGGTTCAGTGTGAGGGGTCTAACTCCAGGTACAGAGTACAGTTTCAAAGTTGTTTCCAATGATTCGAGGGAGTCAGGTATGTGTGAAGTTCAAATCTCAACTGAGCATGGCGAGGATGAAGTCCCTAATTACTCAGCAACAGAGAGAAGTCAGAGCCCAGTAACTAACTGTAGCAGCCTTTCCAATCCATCATCAGTGGAAGATGAAACTAATAACTGTAATCCATATAGTGACCTGACTGATAACCGAGCAGACCATTATCCTTCTTATCACAAGGATAGCGACCAGCATGCCTCTGGAAATTTGTCAAATGATGCTATTAACTGTTCCAATATAGGCGGCGTGGGACTTCCTCCTGATGCATCTGATTCTTTGTCAGACAAGCAGCATGCTGGAGGAATGACTGGCTCCATACCTAGTTCTGACCTGCTAAAGCTCGAAAACAAGCATTCACCAGAGGAGCAAGTCACTGAGGACATGAGCACTGATGATGCGTTGAACTCCCCAGTTCTAACAGGGAGGGAATGTGTGCTGTTAGTTGGTAGCTCAGAAGGAGGTTTGCCTAATACCCCCTGCAAGTTGGAAACACTTAAGGATGGACCTGGAAGGAATGGTAGATCTAAGTCCAGTGGCAAAGATCAAGAAAATGGATCCGGGAAAAGGGAGGGCCCCCAAGATGGAAGCACATCCAAGAAGAGAAGTGGAGAAAGGCAAGATGAGGGCCGTGCCCCAAATGGTTTTTCAGATCGGGATTTTGAGTATTATGTGAAGGTGATCAGATGGTTAGAGTGTGAAGGGCACATAGAAAAGAACTTCAGGCAGAAATTTCTGACTTGGTACAGCTTAAGAGCCACCCCTCAAGAAGTAAGGATTGTGAAAATATACATTGATACATTTCTTGAAGATCCAGCATCTCTTGCAGAGCAGCTTGTGGACACCTTCTCAGAATGTATATCCAGCAAGAGAACATCAGTGGTGCCAGCGGGGTTCTGCATGAAGCTTTGGCATTGA 2217 0.4263 MATDSSFEGLALDPSKCSKLSMEEKRELVYEVSKWSHGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGGNETATDPDPHSSPAPGQKPAKRQRKSENPSHIPVPATGVSVNNGGDVVNTTYCKNSACKATLNQADAFCKRCSCCICHQYDDNKDPSLWLICSSDNPFPGVSCGLSCHLECALKHDGSGIGKDGERPELDGGFYCVSCGKINDLLGCWRKQLMVAKNTRRVDILCYRVSLSQRLLQGTEMYEELYKIVDEAVKKLEPEVGPLTGSPVKIGRGIVNRLSSGPEVQKLCGSALESLDSLLSKRILPSSPNPTILDASLLAPNMVRFEDVIATSLTIILGSEEPSGENIAAYTLWHRKADDVDYPTDPTCISLLPNRRFSVRGLTPGTEYSFKVVSNDSRESGMCEVQISTEHGEDEVPNYSATERSQSPVTNCSSLSNPSSVEDETNNCNPYSDLTDNRADHYPSYHKDSDQHASGNLSNDAINCSNIGGVGLPPDASDSLSDKQHAGGMTGSIPSSDLLKLENKHSPEEQVTEDMSTDDALNSPVLTGRECVLLVGSSEGGLPNTPCKLETLKDGPGRNGRSKSSGKDQENGSGKREGPQDGSTSKKRSGERQDEGRAPNGFSDRDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATPQEVRIVKIYIDTFLEDPASLAEQLVDTFSECISSKRTSVVPAGFCMKLWH 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0735 738 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 738 - -
Ssu6g0735 738 MobiDBLite consensus disorder prediction 86 128 - -
Ssu6g0735 738 MobiDBLite consensus disorder prediction 530 546 - -
Ssu6g0735 738 CDD FN3 346 427 IPR003961 GO:0005515
Ssu6g0735 738 Pfam PHD - plant homeodomain finger protein 141 260 IPR032881 -
Ssu6g0735 738 Gene3D Immunoglobulins 343 443 IPR013783 -
Ssu6g0735 738 MobiDBLite consensus disorder prediction 590 647 - -
Ssu6g0735 738 SUPERFAMILY Fibronectin type III 346 424 IPR036116 GO:0005515
Ssu6g0735 738 ProSiteProfiles Fibronectin type-III domain profile. 346 441 IPR003961 GO:0005515
Ssu6g0735 738 MobiDBLite consensus disorder prediction 601 647 - -
Ssu6g0735 738 MobiDBLite consensus disorder prediction 496 512 - -
Ssu6g0735 738 CDD PHD_VIN3_plant 161 226 - -
Ssu6g0735 738 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 738 IPR044514 GO:0010048|GO:0040029
Ssu6g0735 738 MobiDBLite consensus disorder prediction 551 570 - -
Ssu6g0735 738 MobiDBLite consensus disorder prediction 440 481 - -
Ssu6g0735 738 MobiDBLite consensus disorder prediction 436 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0735 Ssu-Chr6 11588627 11593594 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0735 4 474 PHD Gene Family AT4G30200 56.262 7.75e-169 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0735 - - gmx:100794721 1394.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0735 6 11588627 11593594 Ssu6g0735 6 11588627 11593594 ECH