Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0732 ATGAGGTATATTCGGAGCAACAGCTTGAAGAGGCTCTTCTCCTTGAGAAGACGCGGTTCGAGGGAACAAGTTCTGAGTCCTAACGGTGAAGAAAACGACGAGATTCTCCCGCGTGAAAAACCTTCTCGAAGACCCTCTTGGAAGTGCTTCTCTTATGAAGAGTTGTTTGATGCCACAAATGGCTTCAGCTCAGAAAATATGGTGGGAAAAGGAGGGTATGCAGAGGTTTACAAGGGAACAATGAATGATGAGGAAATTGCGGTGAAGAGGCTCACAAGAACTTCGAGGGATGAGAGGAAGGAGAAAGAGTTTTTGACAGAGATTGGTACAATTGGTCATGTGAACCATTCCAACGTGTTGCCTCTTCTGGGGTGTTGTATTGACAATGGCCTTTACCTTGTTTTTGAGCTATCTTCCAGAGGTTCTGTTGCATCTCTTCTTCATGATGAAACATTGCCTCCTTTAGATTGGAAAACGAGGCATAAGATAGCCATCGGAACTACACGTGGCCTTCACTACTTGCATAAGGGCTGCAAGAGGAGGATAATCCACCGGGACATTAAGGCTTCAAACATTCTGTTAACAAAAGATTTTGAACCTCAGATATCTGATTTTGGGCTAGCAAAATGGCTTCCATCTCAATGGACTCATCATTCAATTGCCCCAATAGAAGGGACATTTGGACATTTGGCCCCTGAGTACTACTTGCATGGAGTTGTGGATGAGAAGACAGATGTATTTGCCTTTGGTGTGTTCCTGCTAGAAGTAATCTCTGGCAGGAAACCTGTGGATGGGTCTCACCAAAGCTTACATAGCTGGGCCAAGCCAATTTTGAACAAGGGTGAGGTAGAAGAGTTGGTAGATCCAAGGCTTGAAGGGGCTTATGATGTGACACAGTTAAACAGACTTGCCTTCGCTGCCTCCCTGTGTATTCGGGCATCTTCAACTTGGCGACCTACCATGAGCCAGGTATTAGAGATAATGGAGGAGGGAGAGACGGATATAGAGAAGTGGAAAATGCCAGAGGAAGAAGAGGAGCAAGAGGAGGAGTTCTGGGGTTTTGAGGATTTGGAATATGAATATGACAGCTCCTTTTCCATGTCTTTACTTGACTCCATTGGAAGTACTTAA 1131 0.45 MRYIRSNSLKRLFSLRRRGSREQVLSPNGEENDEILPREKPSRRPSWKCFSYEELFDATNGFSSENMVGKGGYAEVYKGTMNDEEIAVKRLTRTSRDERKEKEFLTEIGTIGHVNHSNVLPLLGCCIDNGLYLVFELSSRGSVASLLHDETLPPLDWKTRHKIAIGTTRGLHYLHKGCKRRIIHRDIKASNILLTKDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHSWAKPILNKGEVEELVDPRLEGAYDVTQLNRLAFAASLCIRASSTWRPTMSQVLEIMEEGETDIEKWKMPEEEEEQEEEFWGFEDLEYEYDSSFSMSLLDSIGST 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0732 376 MobiDBLite consensus disorder prediction 22 44 - -
Ssu6g0732 376 SMART serkin_6 62 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0732 376 PANTHER OS08G0249100 PROTEIN 19 358 - -
Ssu6g0732 376 SUPERFAMILY Protein kinase-like (PK-like) 42 328 IPR011009 -
Ssu6g0732 376 Gene3D Transferase(Phosphotransferase) domain 1 139 353 - -
Ssu6g0732 376 ProSiteProfiles Protein kinase domain profile. 62 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0732 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Ssu6g0732 376 Gene3D Phosphorylase Kinase; domain 1 40 137 - -
Ssu6g0732 376 PANTHER OS04G0654600 PROTEIN 19 358 - -
Ssu6g0732 376 ProSitePatterns Protein kinases ATP-binding region signature. 68 89 IPR017441 GO:0005524
Ssu6g0732 376 Pfam Protein tyrosine and serine/threonine kinase 65 325 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0732 Ssu-Chr6 11550036 11554497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0732 50 329 Trihelix Transcription Factor Family AT1G70460 44.828 4.80e-71 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Ssu6g0732 PK_Tyr_Ser-Thr 2.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0732 - - gmx:100305398 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0732 6 11550036 11554497 Ssu6g0732 6 11550036 11554497 ECH
Ssu6g0732 6 11550036 11554497 Ssu1g1443 1 33291848 33295750 PCT