Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0729 ATGGAGTGGGACAGCAATTCGGATCTGAGCGGGGACGAGGAGGAAGGGTTCGTCCTCAACGACGATGGCCCTCTCCCGTTTCCCTTCCCCGTCGAGGACCTTCTCCATACGGCGCCGTGCGGTTTCGTCGTCACCGACGCGCTCGAGCCCGACCACCCTATCATTTACGTCAACACCGTCTTCGAGATCGTCACCGGCTACCGCGCCGAGGACGTCCTCGGTCGGAATTGCCGTTTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCGTTGGTGGACTCAACAGTAGTTTCAGAAATTAGAAGATGCCTTGAAGAGGGGATTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCTCTGATGAACAGATTGCGGCTGACACCTATATATGGAGATGATGAGACTATAACACATGTCATTGGAATCCAGTCGTTCACAGAGGCAAACATTGATCTTGGTCCTGTTCTGGGTTCTACAATTAAGGAATCAGCTAAATCGTCTGATCGGTTTCGTTCCGTGCTTTCCTCATTGCATACTCTTCCAGTGGGGGACAGGAATGTATCTCGTGGAGTTTGTGGGATTTTGCAATTGAGTGATGAGGTACTGTCTCTCAAGATACTTGCTCGATTAACTCCTAGAGATATTGCATCAGTTAGCTCTGTCAGTAGACGATTATATGAGCTGACAAAAAATGAAGACCTCTGGAGAATGGTGTGCCAAAATGCATGGGGCAGTGAGACTACATGTGTTTTAGAGACTGTGCCTGGTGCAAGGAGACTTGGATGGGGTCGGCTGGCAAGGGAATTGACCACTCTTGAAGCAGCAGCATGGAGGAAGTTGACCGTTGGAGGTGCTGTTGAACCGTCACGCTGTAATTTTAGTGCTTGTGCAGTTGGTAATAGAGTTGTGCTATTTGGGGGTGAAGGGGTTAACATGCAACCTATGAATGACACCTTTGTATTGGATCTCAATTCTAGTAATCCTGAGTGGCAACATGTCCAGGTAAGCTCTCCTCCTCCTGGTCGTTGGGGCCACACACTTTCTTGTGTTAATGGTTCTCATTTGGTTGTATTTGGAGGCTGTGGAAGACAGGGCTTGCTAAATGATGTGTTTGTTCTGGACCTGGATGCAAAGCCTCCAACTTGGCGTGAAATTTCTGGATTGGCACCTCCACTTCCAAGATCATGGCACAGCTCCTGTACCCTTGATGGTACTAAGTTAATAGTTTCTGGGGGATGTGCAGACTCTGGAGTACTCTTGAGTGACACTTTCCTCATTGATTTGTCAATGGAGAAGCCTGTCTGGCGAGAGATACCAGTGGCATGGACCCCACCATCTCGTCTGGGCCACACATTGTCTGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGCCTGGCCAAGAGTGGGCCCTTGCGTTTTCGTTCCAGTGATGTATTCACGATGGATTTAAGTGAGGAAGAACCTTGTTGGAGATGTGTAACGGGGAGTGGCATGCCTGGTGCTGGAAATCCTGGGGGCATAGCTCCTCCTCCTAGACTTGATCATGTTGCTGTTAGTCTTCCAGGTGGGAGAATTCTAATATTTGGTGGGTCTGTTGCTGGTCTTCACTCTGCCTCTCAGCTTTACATTCTTGATCCAACTGATGAGAAGCCTACATGGAGAATCCTAAATGTACCTGGGCGCCCTCCGAGATTTGCTTGGGGACATAGTACATGTGTTGTTGGAGGGACAAGAGCTATCGTACTGGGTGGTCAAACTGGGGAGGAATGGATGCTAAGCGAGCTTCACGAACTTTCTCTGGCAAGTTCTGTCATCTAA 1839 0.4889 MEWDSNSDLSGDEEEGFVLNDDGPLPFPFPVEDLLHTAPCGFVVTDALEPDHPIIYVNTVFEIVTGYRAEDVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLTPIYGDDETITHVIGIQSFTEANIDLGPVLGSTIKESAKSSDRFRSVLSSLHTLPVGDRNVSRGVCGILQLSDEVLSLKILARLTPRDIASVSSVSRRLYELTKNEDLWRMVCQNAWGSETTCVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLIDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVI 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0729 612 TIGRFAM sensory_box: PAS domain S-box protein 36 148 IPR000014 -
Ssu6g0729 612 Gene3D - 277 426 IPR015915 GO:0005515
Ssu6g0729 612 Gene3D - 196 244 - -
Ssu6g0729 612 SUPERFAMILY PYP-like sensor domain (PAS domain) 38 149 IPR035965 -
Ssu6g0729 612 Pfam Galactose oxidase, central domain 296 346 - -
Ssu6g0729 612 Gene3D PAS domain 24 160 - -
Ssu6g0729 612 Pfam Galactose oxidase, central domain 360 407 - -
Ssu6g0729 612 SUPERFAMILY Galactose oxidase, central domain 283 597 IPR011043 -
Ssu6g0729 612 Pfam Kelch motif 453 504 IPR011498 GO:0005515
Ssu6g0729 612 Pfam Kelch motif 520 567 IPR011498 GO:0005515
Ssu6g0729 612 Gene3D - 427 611 IPR015915 GO:0005515
Ssu6g0729 612 CDD PAS 38 148 IPR000014 -
Ssu6g0729 612 ProSiteProfiles PAS repeat profile. 31 109 IPR000014 -
Ssu6g0729 612 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 611 - -
Ssu6g0729 612 Pfam PAS domain 39 149 IPR000014 -
Ssu6g0729 612 SUPERFAMILY F-box domain 192 261 IPR036047 GO:0005515
Ssu6g0729 612 Pfam F-box-like 208 246 IPR001810 GO:0005515
Ssu6g0729 612 PANTHER ADAGIO PROTEIN 1-LIKE 1 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0729 Ssu-Chr6 11515766 11519590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0729 27 149 AGC Kinase Gene Family AT5G58140 39.683 1.76e-20 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0729 K12115 - gmx:100301888 1168.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0729 6 11515766 11519590 Ssu6g0729 6 11515766 11519590 ECH