Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0717 ATGTCAGTAACCTACAAAGCCTGTTACACGGTGAGGCCTATGGACCCAACATGGTGTGGACGCGTGCCTCTGTCCGAATGGGATCAAATAGGCATCATAACTCACGTGCCCACAATCTACTTCTACCGCCCCCAGCAAAACTGGCTCTCCCCCCACTCCACCATCGCTTCCACATTGAAAGACTCATTAAGCCGAGTCCTGGTGCCGTTTTATCCACTAGCCGGTCGTTTACATTGGATAAGCAACGGTCGGTTAGAGCTTAATTGCAACGCCATGGGGGTTCAGTTCGTTGAAGCCGAGTCCTCATCAAGTTTAGAAGATCTCGGTGACTTTTCACCCTCTTCAGAGTACCACTACCTTGTCCCCACTGTAGACTACACCCTCCCAATTCACGAGTTACCGTTAGTTCTGGTTCAACTAACGAGGTTCAAGTGTGGCGGCATTAGCATCAGCGTAACAACTTCACATGCGGTTGCGGATGGACCAAGTGCATTACACTTCCTTTGTGAGTGGGCAAGGCTTGCACGCGGTGAGCCCGTGCAAACGGTGCCGTTTCTTGACCGAAAACTGTTGCGTGCCGGGGAGCCTCCTTTGGTGCCGCTAACAAAATGTCACGTTCACACGGAGTTCGACCACCCTCCCTTGTTGCTCGGCCAAACGGGGAACACGgaggaaaggaagaagaaaaccACGGTGGCTATTCTGAAGCTGAGCAAAACCCAAGTCGAGACACTGAAAAAGAGAGCGAATGAGAGTTGGCGTAGACCTGGGAACGGTCGTGGCTATAGCCGTTATGAGAGCGTGACTGGTCACATATGGAGAAGTGCGTGCAAGGCGAGGGGGCACAAAGAGGACCAACCGACCGCGCTTGGCGTTTGCGTTGACTCGAGGTGTCGCATGCAACCTCCTTTGCCAAAAGGGTATTTTGGGAACGCCACTTTGGATGTGGTTGCTTCTGGCCTTGCGGGTGATTTGGTGTCGAAGCCGTTGGGGTATGCGTCGAGCAGAATAAGGGATGCCATTGAGAGGGTTACTGATGAGTACGTGAGGTCGGGGATTGAGTTCTTGAAGAACCAGGAGGATTTGAGTAGGTTTCAAGATCTTTATGCAATAGGGAGTGACAAGGGGCCTTTCTATGGGAACCCTAATTTGGGTGTGGTTAGTTGGTTGACGTTGCCGATCTATGGCGTTGATTTTGGGTGGGGGAAGGAGGTTTATATGGGTCCAGGGACACATGACTTCGATGGAGATTCTTTGCTTCTTCCTGGTCCAGATGGGGATGGATCTTTGGTGCTTGCTTTATGTCTGCAAGTGGTCCACATGGATGCGTTTAAGAAGCATTTTTACGAAGACATTGTGTAA 1362 0.5051 MSVTYKACYTVRPMDPTWCGRVPLSEWDQIGIITHVPTIYFYRPQQNWLSPHSTIASTLKDSLSRVLVPFYPLAGRLHWISNGRLELNCNAMGVQFVEAESSSSLEDLGDFSPSSEYHYLVPTVDYTLPIHELPLVLVQLTRFKCGGISISVTTSHAVADGPSALHFLCEWARLARGEPVQTVPFLDRKLLRAGEPPLVPLTKCHVHTEFDHPPLLLGQTGNTEERKKKTTVAILKLSKTQVETLKKRANESWRRPGNGRGYSRYESVTGHIWRSACKARGHKEDQPTALGVCVDSRCRMQPPLPKGYFGNATLDVVASGLAGDLVSKPLGYASSRIRDAIERVTDEYVRSGIEFLKNQEDLSRFQDLYAIGSDKGPFYGNPNLGVVSWLTLPIYGVDFGWGKEVYMGPGTHDFDGDSLLLPGPDGDGSLVLALCLQVVHMDAFKKHFYEDIV 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0717 453 Gene3D - 1 211 IPR023213 -
Ssu6g0717 453 Gene3D - 219 451 IPR023213 -
Ssu6g0717 453 SUPERFAMILY CoA-dependent acyltransferases 22 183 - -
Ssu6g0717 453 Pfam Transferase family 1 450 - -
Ssu6g0717 453 PANTHER SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE 5 452 - -
Ssu6g0717 453 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 5 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0717 Ssu-Chr6 11299685 11301046 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0717 1 450 Monolignol Biosynthesis Gene Families AT5G48930 41.150 1.30e-118 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0717 K13065 - gmx:100777007 768.844