Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0716 ATGCCAGTAACCTTCAAAGCCTGTTACACCGTGAGGCCTATGGAGACAACATGGTGCGGACGCGTACCTTTATCTGAATGGGATCAAACAGGCAAAGTAACCCACGTGCCCATAATCTACTTCTACCGCCCCCAACAAAACTGGCTCTCCCCACACTCCACCATTGCTTCCACCTTGAAAGACTCATTAAGCCGAGTCCTGGTGCCGTTTTATCCACTAGCCGGTCGTTTACACTGGATAAGCAATGGTCGTTTAGAGCTTGATTGCAACGCCATGGGGGTTCAGTTTGCTGAAGCCGAGTCCTCATCAAGTTTGGAAGATCTCGGTGACTTCTCACCCTCTTCAGAGTACCACTACCTTGTCCCCACTGTAGACTACGCCCTCCCAATTCACGAGTGGCCGTTGCTTCTGGTTCAACTAACGAGATTCAAGTGTGGTGGCATTAGTATTGGCATAACACTTTCACATGCGGTTGTGGATGGACCAAGTGCAATGCACTTCATGTGTGAGTGGGCAAGAAATGCACGCGGTGAGCCTTTGCAAACGGTGCCGTTTCATGATAAACAAGTGTTGCGTGCTGGGGAGCCTCCTTCGGTGCCACTAACAAAAATATGTCACGTTCACACGGAGTTCGACCACCCTCCGGGCCAAACTGAGAACACAGAGGAAAGGAGGAAGGAAACCACAATGGTTATCCTCAAACTGAGCAAAACGCAAGTTGAGACATTGAGAAAGAGAGCAAACGAGAGTTGGCATAGGCCTAGAAATGGTTGTGGTTATTATAGCCGTTACGAGAGTGTGGCTGGTCACATATGGAGAAGTGCATGCAAGGCAAGGGGGCACAAAGAGGACCAACCAACCACGCTTACTGTTATCGTTGACTCGAGGTGTCACATGCAACCTCCTTTGCCAGAAGGGTATTTTGGGAATGCCACTTTGGATACGGTTGCTTCTGGCCTTGCGGGTGATTTGGTGTCGAAGCCGCTGGGGTATGCATCGAGTAGAATAAGGGAGGCCATTGAGAGGGTTACTGATGAGTACTTGAGGTCGGGGATTGAGTTCTTGAAGAATCAGGAGGATTTGAGGAGGTTTCATCAAGATCTTCATGCAAGTAGGAGTGAGGAGGAGCCTTTCTATGGGAACCCCAATCTGGCTGTGGTTAGTTGGTTGACATTACCTATCTATGGCATTGATTTTGGGTGGGGAAACGAGGTTTATATGGGTCCAGCAACACATGACTTCGATGGAGATTTTGTGCTTCTTCCTGGTCCAGATGGGGATGGATCTTTGCTGGTTGCTTTAGGTCTGCAAGTGGTGCATATGGATGCGTTTAAGAAGCATTTTTACGAACACATTGTGTAA 1362 0.4875 MPVTFKACYTVRPMETTWCGRVPLSEWDQTGKVTHVPIIYFYRPQQNWLSPHSTIASTLKDSLSRVLVPFYPLAGRLHWISNGRLELDCNAMGVQFAEAESSSSLEDLGDFSPSSEYHYLVPTVDYALPIHEWPLLLVQLTRFKCGGISIGITLSHAVVDGPSAMHFMCEWARNARGEPLQTVPFHDKQVLRAGEPPSVPLTKICHVHTEFDHPPGQTENTEERRKETTMVILKLSKTQVETLRKRANESWHRPRNGCGYYSRYESVAGHIWRSACKARGHKEDQPTTLTVIVDSRCHMQPPLPEGYFGNATLDTVASGLAGDLVSKPLGYASSRIREAIERVTDEYLRSGIEFLKNQEDLRRFHQDLHASRSEEEPFYGNPNLAVVSWLTLPIYGIDFGWGNEVYMGPATHDFDGDFVLLPGPDGDGSLLVALGLQVVHMDAFKKHFYEHIV 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0716 453 Gene3D - 217 451 IPR023213 -
Ssu6g0716 453 SUPERFAMILY CoA-dependent acyltransferases 57 180 - -
Ssu6g0716 453 Pfam Transferase family 1 450 - -
Ssu6g0716 453 Gene3D - 1 212 IPR023213 -
Ssu6g0716 453 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 5 451 - -
Ssu6g0716 453 PANTHER SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE 5 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0716 Ssu-Chr6 11286100 11287461 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0716 1 450 Monolignol Biosynthesis Gene Families AT5G48930 38.901 2.31e-110 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0716 K13065 - gmx:100777532 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0716 6 11286100 11287461 Ssu6g0716 6 11286100 11287461 ECH