Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0698 ATGCGGGGTAGTGAGAAAAAGTTAAACAACAAAGGATCTAAAAAGTCCAGTCATTTGAAGGCACGTACGAAGTGCCAAGGGAAGAAGGATAAACTGAAAGTGGAATCAAAATCTCACAAAAACAATGTTGGCACTGACATATCAAGGAAGAGAGTTATTGGCTCTTCCCTCAAGGTCAAAGGGCCACGTAAGGATTCCTCAGATAAGAAATTGATTACTGGACAAAAATTGCCTATAAAGAACAGAAAATCTTCACAGAAGCCATCCTCAATGTTACAAGGCAAAAAAGCTTCTCTTAGCTCTAGAAAAGAGGAGAAAGATGCTGACGGGGTGGTAAAGCttcaaaaaatgaagagaaagagaaagaaaaaaaggcaaAGGAATAATGTGGATCTTGATGATCCTTCACGCCTGCAGAGGAGAACAAGGTATCTTTTAATCAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCAGGAGAAGGTTGGAAAGGTCAGAGTCGAGAAAAAATTAGGCCAGAAAAGGAGCTACAAAGAGCAAGGAAGCAGATATTAAAATGTAGACTTGGTATTCGTGATGCCATTCGCCAGTTGGATTCTCTTAGTTCATTGAGTAGCATTGAAGATTCTGCCATTGCTCTGGATGGATCTGTTTACCATGAACATATATTTTGTGTAAAGTGCAACATGCGTGAAGAACTTCCAGATAATGATATTATACTATGTGATGGTACATGCAAGCGTGCTTTTCACCAAAAATGTCTAGACCCTCCTTTAGATACGGAAAATATTCCTCCCGGAGAGCGTAGCtggttttgtaaattttgtgaatGTAAGATGGAAATACTGGAGGCAATGAATGCTCATCTTGGAACTCACTTCTCCTTGCACAGTACTTGGCGGGATGTGTTCAAAGAAGAGGCTGCTATACCTGATGGTGAGGCTGCATTACTGAATCCTGAAGAAGAATGGCCATCAGATGATTCTGAAGATGATGATTATGACCCAGAGAGGAAAGAAGACAGCCACAATATTAACCCAGAAGGAACTGATGATAGTGCATCTGATGATTTAAGCAGTTCTACCAGTCTGTGTTCTTCTGATGATGAATGTTATCCAGTAGATGGTTTCAGTCATGCATATTTTTCTGTCAATAGCAGCATAGATTCTGATGAGTCTGAGGAAAAAGCCTGTGGGCGTAGGCAGCGAAAAGCTGTTGACTACAAGAAACTTTATGATGAAATGTTTGGAAAGGATGCTCCTGCATATGAACAATTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTCTGATGCTGTTGATTCTCTTATGACTTTGCATGAAAGTGAGAATAAGCACCCCAATAATGAGCACAACAACATGACAAGAAAAGATTCTTCAGGCATTAATATCAAAAGGCATTGTTTTAGGATTCCGCGTGATGCAGTTGAGAAGCTTCGCCAAGTTTTTGCTGAGAACGAACTTCCTCCAAGATCTATAAGAGAAGGTCTTTCAAAAGAGCTGGGACTTGACACTGAGAAGGTCAGCAAATGGTTCAAAAATGCACGTTACTTGGCACTTAAAAACAGAAAGCATCAACCAGCAGAAGGAGCAGCAGATCAGCTTCAGAGTATCACTTCTACGAAGAACTCCAGATTGCAAAATCAGGAGAATGCTGATCTTTTGAAATCAAAGACCTCGAAAATTACTACAACACATTCCCAGAAGAATGATAAAAATGTCActggaagaaagaaaattaagtcaTCTAGCAAGAAAAGACTACCAGAAATTCCTCCACCGCCAGGAGAAAGTGGTGGCAACAAGGACTTTATGGAGATCAGTGATGATGTGAGCTTGAAGAAACtgttgaagaaaagaaagaggttggtaaattttacatttgaaGGAGGCTCTCAGGTGGCAGAGTTGGAATTTGAAAGACTAAGCAAATTGAAGACTAAAGTAGATAGTATGAAGCAAAAATTAACTGCAATTCAAAATTACAGGGTAAAAGGTTCAGATGAACCCCATTCTAATGAACCATCCATTGTATATGTACCCACAGCTGTGTTAAGGGAAAAGGTTGAATGA 2118 0.382 MRGSEKKLNNKGSKKSSHLKARTKCQGKKDKLKVESKSHKNNVGTDISRKRVIGSSLKVKGPRKDSSDKKLITGQKLPIKNRKSSQKPSSMLQGKKASLSSRKEEKDADGVVKLQKMKRKRKKKRQRNNVDLDDPSRLQRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCRLGIRDAIRQLDSLSSLSSIEDSAIALDGSVYHEHIFCVKCNMREELPDNDIILCDGTCKRAFHQKCLDPPLDTENIPPGERSWFCKFCECKMEILEAMNAHLGTHFSLHSTWRDVFKEEAAIPDGEAALLNPEEEWPSDDSEDDDYDPERKEDSHNINPEGTDDSASDDLSSSTSLCSSDDECYPVDGFSHAYFSVNSSIDSDESEEKACGRRQRKAVDYKKLYDEMFGKDAPAYEQLSEDEDWGPGKRKRREKESDAVDSLMTLHESENKHPNNEHNNMTRKDSSGINIKRHCFRIPRDAVEKLRQVFAENELPPRSIREGLSKELGLDTEKVSKWFKNARYLALKNRKHQPAEGAADQLQSITSTKNSRLQNQENADLLKSKTSKITTTHSQKNDKNVTGRKKIKSSSKKRLPEIPPPPGESGGNKDFMEISDDVSLKKLLKKRKRLVNFTFEGGSQVAELEFERLSKLKTKVDSMKQKLTAIQNYRVKGSDEPHSNEPSIVYVPTAVLREKVE 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0698 705 Gene3D - 480 545 - -
Ssu6g0698 705 MobiDBLite consensus disorder prediction 556 585 - -
Ssu6g0698 705 MobiDBLite consensus disorder prediction 322 336 - -
Ssu6g0698 705 ProSiteProfiles Zinc finger PHD-type profile. 223 280 IPR019787 -
Ssu6g0698 705 MobiDBLite consensus disorder prediction 13 27 - -
Ssu6g0698 705 CDD PHD_PRHA_like 225 277 IPR045876 -
Ssu6g0698 705 MobiDBLite consensus disorder prediction 556 619 - -
Ssu6g0698 705 PANTHER POLYCOMB PROTEIN PCL 1 677 - -
Ssu6g0698 705 SMART PHD_3 225 278 IPR001965 -
Ssu6g0698 705 ProSitePatterns Zinc finger PHD-type signature. 226 277 IPR019786 -
Ssu6g0698 705 ProSiteProfiles 'Homeobox' domain profile. 477 537 IPR001356 GO:0003677
Ssu6g0698 705 MobiDBLite consensus disorder prediction 349 363 - -
Ssu6g0698 705 MobiDBLite consensus disorder prediction 1 135 - -
Ssu6g0698 705 MobiDBLite consensus disorder prediction 421 476 - -
Ssu6g0698 705 Pfam PHD-finger 225 280 IPR019787 -
Ssu6g0698 705 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 1 677 - -
Ssu6g0698 705 Pfam Homeodomain 488 532 IPR001356 GO:0003677
Ssu6g0698 705 MobiDBLite consensus disorder prediction 316 363 - -
Ssu6g0698 705 SMART HOX_1 479 541 IPR001356 GO:0003677
Ssu6g0698 705 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 274 IPR013083 -
Ssu6g0698 705 SUPERFAMILY Homeodomain-like 480 543 IPR009057 -
Ssu6g0698 705 SUPERFAMILY FYVE/PHD zinc finger 217 283 IPR011011 -
Ssu6g0698 705 CDD homeodomain 480 541 IPR001356 GO:0003677
Ssu6g0698 705 MobiDBLite consensus disorder prediction 98 114 - -
Ssu6g0698 705 MobiDBLite consensus disorder prediction 28 46 - -
Ssu6g0698 705 MobiDBLite consensus disorder prediction 421 468 - -
Ssu6g0698 705 MobiDBLite consensus disorder prediction 78 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0698 Ssu-Chr6 10919954 10924501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0698 128 548 Homeobox Transcription Factor Family AT4G29940 58.372 6.59e-157 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Ssu6g0698 Homeodomain 9.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0698 - - gmx:100817639 1120.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0698 6 10919954 10924501 Ssu6g0698 6 10919954 10924501 ECH
Ssu6g0698 6 10919954 10924501 Ssu1g1493 1 34918361 34924209 PCT