Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0696 ATGAAGGTAGCTCTAGCTGGCCCTTCTACAAATTATCACCCCATAGGTTTTGCTCACGTCTCTTTGGTCCTTCCTGAACAGATTACGTTATGGGAAGAAGAAACGGGAGAAGGTCGCTACTGCAAGAAACCCTTCATCGTCGAGTGGAGGCCATGTACCCTGCCGGAACCACGTACCCGACCACCGACGAGATCGTCAACCATCTTCGTTCAACCTATCCTGATTACCGGCGAACCAAACACCAAGCTCTCATTGGCTTCGTTCAGGAAGCTCTTCAAGCCATGCGGAACCGTCACCGATGACGCTGACCACGAGCAAGGTCGGAAGAGACGGAAGAAAGTTGGAGATTCAGCTTCGGAGAGCGACGCAGATAACGGGGAACTTTCCTTCGACTTGACCAAGACAATGCTGCGGAATTCATACATGGAATTGGAGGTGGGCAAGGGCGctagtgatgatgatgatgttgaggtGAAGGGGAAGGGGAAGGGGAAGGATGATGTGACAAGGTTTGGATTTAGGGATTTGGGTGGGATGCAGAAGACTAAGAAGGAACTGAATGAGTTGCTGCTTCCTATCTTCCATCCCCATGTGGCTAAAGCGTTGGGAGTGAGGCCCGCATCTGGCATTTTGTTGCATGGACCTCCTGGCTGTGGGAAGACCAGACTCGCTCGTGCTACAGCCAATGAAGCtcaatttcctttttactaCATTTCAGCCAGCGAAGTCGTCTCTGGAATCTCAGGTGAATCTGAACAAAACATTAGAGACCTTTTCTCTAAAGCATACAGGACTGCTCCATCAGTTGTCTTTATTGACGAGATCGATGCAATTGCTTCAAAAAGAGAGGGCTTAGCGCGCGAGATGGAGAGACGAATTGTCACGCAGTTGTTGACATCCATGGATCAACCAGATAATGACAAGTATGTTCTTGTGATTGGAGCTACTAATAGACCCAATGACCTTGATCCCGCCTTTAGAAGACCTGGAAGATTTGATCGTGAGTTTTCTGTTAAAATGCCTGATGAACCTGCCAGGAAGGAAATCCTTTCCGTGCTTACTCGCAATGTTAAACTTGATGGTGACGTTGATCTATCAAAGATAGCTACATCTACACCAGCATTTGTTGGTGCCGATTTGGAAAGTGTAATCCGTCATGGTGGTTTAATGGCCATGATGAGAATAATATCTGAAAGGTATCCCATGATAGAAGAGCCTCCAGACGACTGTTTAAGGGAACCTTGGTCGCAAGAAGAAGTGGATAAGGCTGCCATCAAAATGTCTGATTTGCAGGAAGCAGTCAAAATGGTGCAACCTTCAGCAACAAGAGCAGGGTTCTCTCCCATTCCTAAGGTAAAATGGGAAGATATTGGTGGGCTTGATCTCTTAAGAGAAGAGTTTGATGACTATATCATAAGGCCTATTAATCATCCCAAGGATTATGAGGGATTTGGGGTGGATCTTACAACGGGATTTTTGCTGTATGGACCTCCAGGTTGTGGTAAAACACTGATTGCCAAAGCTGTTGCCAATGCTGCAGGAGTTAGGTTCCGTCATATTAAGGGACCTGAACTTCTAAATGAATATGTTGGAAGAAGTGAGCGTGCAGTTCGGGATATCTTTGATAGTGCAAGGACATGTAAACCTTGTATACTATTTTTTGACGAGGTGGATGCGTTGACAACCGAACGCGGTAAAGAAGGTGGATCGGTCACTGAACGAGTCTTGGACCAGTTGCTTATTGAGTTAGATGGCGGAGAGGAAAGGAGTGATGTTTTTGTGATAGGAGCAACAAATAGGCCTGACGTAATTGATCGTGCCCTTTTACGGCCTGGCAGGTTTGGTAGACCTCTTTACATTCCTCTCCCAAGTCCAGACCAGCGGGTTTTGATATTGAAAGCTCTTGCAAGAAAGAGTCATGTTGATGCCAGTACGGATTTGAGCGCCATAGGAAGATCGGAAGCTTGTGAAAATATGAGTGGTGCTGATCTTGCTTTATTGATGAATGAAGCAAAAATGAccactattaaaaaaaaggggacCTCAACTGATCCATCGCTCATCAAGCCATGTCATTTTGAAGCAGCACTGAATAGAGTCTTTCCCTCTGTGTCTGAAAAGCAAAAGCGGTACTACGAGCGTTTGTCAAAGAAGTTTAGCCCTTCCTTCCACAGAAatgtaaaaggaaagaaatag 2196 0.4458 MKVALAGPSTNYHPIGFAHVSLVLPEQITLWEEETGEGRYCKKPFIVEWRPCTLPEPRTRPPTRSSTIFVQPILITGEPNTKLSLASFRKLFKPCGTVTDDADHEQGRKRRKKVGDSASESDADNGELSFDLTKTMLRNSYMELEVGKGASDDDDVEVKGKGKGKDDVTRFGFRDLGGMQKTKKELNELLLPIFHPHVAKALGVRPASGILLHGPPGCGKTRLARATANEAQFPFYYISASEVVSGISGESEQNIRDLFSKAYRTAPSVVFIDEIDAIASKREGLAREMERRIVTQLLTSMDQPDNDKYVLVIGATNRPNDLDPAFRRPGRFDREFSVKMPDEPARKEILSVLTRNVKLDGDVDLSKIATSTPAFVGADLESVIRHGGLMAMMRIISERYPMIEEPPDDCLREPWSQEEVDKAAIKMSDLQEAVKMVQPSATRAGFSPIPKVKWEDIGGLDLLREEFDDYIIRPINHPKDYEGFGVDLTTGFLLYGPPGCGKTLIAKAVANAAGVRFRHIKGPELLNEYVGRSERAVRDIFDSARTCKPCILFFDEVDALTTERGKEGGSVTERVLDQLLIELDGGEERSDVFVIGATNRPDVIDRALLRPGRFGRPLYIPLPSPDQRVLILKALARKSHVDASTDLSAIGRSEACENMSGADLALLMNEAKMTTIKKKGTSTDPSLIKPCHFEAALNRVFPSVSEKQKRYYERLSKKFSPSFHRNVKGKK 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0696 731 ProSitePatterns AAA-protein family signature. 592 610 IPR003960 GO:0005524|GO:0016887
Ssu6g0696 731 Gene3D - 341 444 - -
Ssu6g0696 731 Gene3D - 153 339 IPR027417 -
Ssu6g0696 731 SMART AAA_5 488 624 IPR003593 -
Ssu6g0696 731 SMART AAA_5 206 342 IPR003593 -
Ssu6g0696 731 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 138 719 - -
Ssu6g0696 731 MobiDBLite consensus disorder prediction 99 127 - -
Ssu6g0696 731 ProSitePatterns AAA-protein family signature. 310 328 IPR003960 GO:0005524|GO:0016887
Ssu6g0696 731 CDD AAA 491 622 - -
Ssu6g0696 731 MobiDBLite consensus disorder prediction 99 120 - -
Ssu6g0696 731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 435 IPR027417 -
Ssu6g0696 731 Gene3D - 450 713 IPR027417 -
Ssu6g0696 731 PANTHER AAA-FAMILY ATPASE 138 719 - -
Ssu6g0696 731 CDD AAA 198 338 - -
Ssu6g0696 731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 450 718 IPR027417 -
Ssu6g0696 731 Pfam ATPase family associated with various cellular activities (AAA) 210 338 IPR003959 GO:0005524|GO:0016887
Ssu6g0696 731 Pfam ATPase family associated with various cellular activities (AAA) 493 621 IPR003959 GO:0005524|GO:0016887
Ssu6g0696 731 Gene3D - 623 698 - -
Ssu6g0696 731 Pfam AAA+ lid domain 362 397 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0696 Ssu-Chr6 10887443 10898938 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0696 176 724 Calmodulin-binding Proteins AT3G56690 34.647 8.50e-110 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0696 K14571 - gmx:100809594 729.169