Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0695 atgTCTTCGTGTTTAAGCGGAGCTGGGGGAACAACCTACGGTTTCGATTTCGAATTCGTTAAATCCCCATCTTCCTCCACCAGAACCTCACACACGTCTTCTTCACCTTCCTCAACAATCTCCGAGTCGAGCAATTCGGCACTAGCAATCTCAACGAAGAAACCTAGAACTCCTCGAAAGCGACCCAACCAAACCTACAACGAAGCCGCGGCGCTTCTCTCCACGGCGTACCCGAACCTCTTCTCCACGAAGAACCTCAAAACGCACGGCAAATTCACAAAGCCCGCATCGGAGAGTTTCGATTATGACTCTTCGGAGCTGTTATTGCCGTTCAGAGTTTTGGACAGCTCATCCTCGTGTTTCCTTCTGGACCAACCGGGCCCAGAACACAAGCCCATGGAGAGGCCCAAAGTGGTGAGCGTGTttgagaaggagaaggagaaggagaagcaGTGCCAGAGCCCCGGGGAGATAAGCTCCATAGTGAATTTGAATTCCCTTGAATTGAACGAGGAGTGCGAAGAGAGCTTCGACGCGGAATCGATTCTCGACGAGGAAGTCGAGGAAGGGATCGATAGCATCATGGGGAGCAGGGTCCAGGAGGACTCAAACGACGGCGTTAGTAACGTGCCTTGGATAATGGCTTTTCGCGCGAAATTGGAGTTCCCGAGACCCCGCGTTAGGGCGCTCCGCCACGTCGACGACGGAAACTGGTGGAACTTTCCGGCCGTCGATATTCTTCAAATATCGCCCAAAATTAGCGCCAAGCCTCCGCCGGTGACCGccgagaagaagatgatgaagaagaagaagaagaaggtggCGGCGCCGGCGGAGACACCGGTCGTGGAGTTGAAGAACGAGGAATTGCCCAAACCGAAACAGGGTTTGATGTTGAAATTGAATTACGACGACATTCGGAACGCTTGGTCTGACCGCGGGACGCCGTTCGCCGACGACAGCCCCCTCGCCGACGCGCCGGAAAAGGACGTCACTGCGCGGCTGTCGCAAATTGATTTGTTATGGGACAGTGGAGGAGGGAGAGAAGCTAGCGTGCTGCGCTACAAAGAGAAGCGGCGAACGCGTCTCTTCTCGAAGAAGATCAGGTACCAGGTCAGGAAAGTCAACGCAGATCGACGGCCCAGAATGAAGGGGCGATTTGTTAGGAGGCTCAATTCTAGCTCAAATGCACACAGATGA 1200 0.5125 MSSCLSGAGGTTYGFDFEFVKSPSSSTRTSHTSSSPSSTISESSNSALAISTKKPRTPRKRPNQTYNEAAALLSTAYPNLFSTKNLKTHGKFTKPASESFDYDSSELLLPFRVLDSSSSCFLLDQPGPEHKPMERPKVVSVFEKEKEKEKQCQSPGEISSIVNLNSLELNEECEESFDAESILDEEVEEGIDSIMGSRVQEDSNDGVSNVPWIMAFRAKLEFPRPRVRALRHVDDGNWWNFPAVDILQISPKISAKPPPVTAEKKMMKKKKKKVAAPAETPVVELKNEELPKPKQGLMLKLNYDDIRNAWSDRGTPFADDSPLADAPEKDVTARLSQIDLLWDSGGGREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRLNSSSNAHR 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0695 399 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 394 - -
Ssu6g0695 399 PANTHER OS02G0148000 PROTEIN 1 394 - -
Ssu6g0695 399 MobiDBLite consensus disorder prediction 22 52 - -
Ssu6g0695 399 ProSiteProfiles CCT domain profile. 348 390 IPR010402 GO:0005515
Ssu6g0695 399 MobiDBLite consensus disorder prediction 22 63 - -
Ssu6g0695 399 Pfam CCT motif 348 389 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0695 Ssu-Chr6 10880570 10883257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0695 261 390 C2C2-CO-like Transcription Factor Family AT1G25440 44.371 3.50e-24 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu6g0695 CCT 7.6e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0695 - - gmx:100784788 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0695 6 10880570 10883257 Ssu6g0695 6 10880570 10883257 ECH
Ssu6g0695 6 10880570 10883257 Ssu1g1495 1 34941295 34941939 PCT