Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0690 ATGGAGAATATTGGTGAGGAGTACAAACATTACTGGGAGACCAACATGTTTTTCCAAAACGAAGAGCTCGACAGCTGGGCAATGGATGAGGCTCTCTCCGGGTACTATGATTCAAGTTCCCCGGACGGTGGTGCTTCATCGGTGGCATCTAAGAACATCGCTTCGGAGAGAAATAGGAGGAAGAAGCTGAACGAGAGGCTTTTTGCACTTAGAGCGGTGGTCCCCAACATTAGCAAGATGGATAAGGCTTCTATCATTAAGGATGCTATTGAGTACATCCAGCACTTGCATGAGCAAGAGAAGAGAATCCAAGCCGAGATTTTGGATCTTGAATCTGGGAAGCTCAAAAACCCAACCTATGAATTTGAGCAGGACCTCCCTATTTTGCTCAGGTCTAAGAAGAAGAGAACAGAACATCTACTTGACCCTGTCAGCTCAAGAAATTCCCCAATTGAAATAATTGAGTTCAGGGTTACATACATGGGAGAGAAGACGTTTGTGGTGAGCTTGACATGTAGCAAAAGGACAGACACAATGGTAAAACTGTGTGAGGTGTTCGAATCTTTAAAGCTGAAGGTCATTACAGCCAATATGACTTCTTTTTCAGGCACGCTTTTGAAGACGGTCTTCATCGAGGCAGATGAGGAAGAGAAAGATGTTTTGCAGATAAAAATTCAGACAGCCATTTCAGCTCTCAATGATCCTCAAAGCCCAATGAGTATCTGA 726 0.4394 MENIGEEYKHYWETNMFFQNEELDSWAMDEALSGYYDSSSPDGGASSVASKNIASERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIEYIQHLHEQEKRIQAEILDLESGKLKNPTYEFEQDLPILLRSKKKRTEHLLDPVSSRNSPIEIIEFRVTYMGEKTFVVSLTCSKRTDTMVKLCEVFESLKLKVITANMTSFSGTLLKTVFIEADEEEKDVLQIKIQTAISALNDPQSPMSI 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0690 241 Pfam Helix-loop-helix DNA-binding domain 52 97 IPR011598 GO:0046983
Ssu6g0690 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Ssu6g0690 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 110 IPR036638 GO:0046983
Ssu6g0690 241 PANTHER TRANSCRIPTION FACTOR BHLH35 1 235 - -
Ssu6g0690 241 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 235 - -
Ssu6g0690 241 SMART finulus 53 102 IPR011598 GO:0046983
Ssu6g0690 241 Gene3D - 46 113 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0690 Ssu-Chr6 10821261 10830005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0690 1 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 61.290 3.79e-86 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu6g0690 HLH 3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0690 - - gmx:100817978 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0690 6 10821261 10830005 Ssu6g0690 6 10821261 10830005 ECH
Ssu6g0690 6 10821261 10830005 Ssu1g1499 1 35086647 35095799 PCT