Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0678 ATGCCAATAGATCTGGCAGGTTTTGCCAAGATGAGGATGGAAGAGAGTATAGACATACAAGAAGCAGCTTCCGCTGGGTTGAAGAGCATGGAGCATCTGATTCGCGTGCTTTCGTCTCAaatcccttcttcttcttcttcagctTCTGCTTCTGCTTCGTCTTCTTCTTCCGCACACCACCACCGTCTCAATCTCAACCACCTTGACTGCACGGAAATCACCGACTTCACAGTCTCCAAGTTCAAACAAGTCATCAACTTGTTGAATCGCACCGGACACGCTCGCTTTCGTCGTGCACCCTCTCATCCTTCTCCTTCTGTTCCTTCTCAGCCTCAACCTCAGCCCCAGACACTGACTCTTGATTTTGCAAACCCTATCCCGGTTAAGTCAAAGCCCAATCCCAAACCTTCTTCTACCGATTTGTCGGTTTCTGAATACTCTAAGACCAAGGAAACCACGTTTAGCATATCGCCGCCCATGtccaccaccacctcctcctTCATGTCCTCCATCACCGCCGACGGCACCGTCTCCGACGGCAAGATCGGCCCCGCCATCCTCGCCGCCGGCAAGCCCCCTCTCTCCTCATCCCACCGGAAAAGGTGTCACGACGCCAACCTCTCCGCCGGAAAAGCCTCTTCCTCCGCCCACTGTCATTGCTCCAAGAGAAggaaatccCGTGTGAAACGAATGATTCGAGTGCCGGCGATAAGTTCGAAGATTGCTGATATCCCAGCGGACGAGTACTCATGGAGAAAGTATGGTCAAAAGCCCATCAAGGGTTCACCCTTCCCACGAGGGTACTACAAGTGCAGTAGCGTGAGAGGGTGTCCAGCGAGGAAGCACGTGGAGCGAGCGCAAGATGACCCCAACATGCTCATCGTTACCTACGAGGGAGAGCACCGTCATCCGCAACCGCATATGCCGGAAACGGCCACCGCCGCCGCCGCGGCTTTCGCCGCTCAGCCTGTTTAA 975 0.5159 MPIDLAGFAKMRMEESIDIQEAASAGLKSMEHLIRVLSSQIPSSSSSASASASSSSSAHHHRLNLNHLDCTEITDFTVSKFKQVINLLNRTGHARFRRAPSHPSPSVPSQPQPQPQTLTLDFANPIPVKSKPNPKPSSTDLSVSEYSKTKETTFSISPPMSTTTSSFMSSITADGTVSDGKIGPAILAAGKPPLSSSHRKRCHDANLSAGKASSSAHCHCSKRRKSRVKRMIRVPAISSKIADIPADEYSWRKYGQKPIKGSPFPRGYYKCSSVRGCPARKHVERAQDDPNMLIVTYEGEHRHPQPHMPETATAAAAAFAAQPV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0678 324 ProSiteProfiles WRKY domain profile. 240 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g0678 324 MobiDBLite consensus disorder prediction 96 144 - -
Ssu6g0678 324 SMART WRKY_cls 245 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g0678 324 Gene3D WRKY domain 231 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g0678 324 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 9 314 - -
Ssu6g0678 324 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 9 314 IPR044810 GO:0003700
Ssu6g0678 324 Pfam WRKY DNA -binding domain 247 304 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g0678 324 Pfam Plant zinc cluster domain 199 243 IPR018872 -
Ssu6g0678 324 SUPERFAMILY WRKY DNA-binding domain 243 306 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0678 Ssu-Chr6 10534589 10535843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0678 1 320 WRKY Transcription Factor Family AT2G24570 47.175 3.02e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu6g0678 WRKY 1.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0678 - - var:108322692 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0678 6 10534589 10535843 Ssu6g0678 6 10534589 10535843 ECH
Ssu2g2521 2 84113048 84114445 Ssu6g0678 6 10534589 10535843 PCT
Ssu6g0678 6 10534589 10535843 Ssu1g1512 1 35581416 35583112 PCT