Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0676 ATGGGGAACTGTTGGAGTCTTCCATCAGGTTCTCCAGGAGATCATCCCAACTCCAATACTGCCCCCAACCCCAACAATCAATCAGGGAGTAATCAGTTTTCTGCTGGGCTCAGCAACACAAGATTAATACAGAATGGCAATTCTACTTCTCTTGGGTGTAGCAGTCACTCTGGAGGAACCAGCAGGCTCTTTGGGCCAAGTAGTAGCAATAACTACTCAACAGGAAATAACACTAGCACATCCCTTTGGGGCTATGAGAATAGCCAAGCCTCTCGAGTCAGAAATGAAGAGGAATTTCCTCATGGGCAGATCCTGGATGTTGCAGACTTGAGAGTATTTACTTTGGCAGAATTGAAGGCAGCCACCAAAAATTTCAGAGCTGATACTGTGTTAGGAGAGGGCGGCTTTGGTAAAGTATACAAGGGTTTGATTAGAGGTGAGGGATTGACTATTGCCATCAAGAAACGGAATCCTGATAGCTTGCAAGGAGTTGCGGAATGGcagTCAGAGGTGAATTTCTTAGGGAGGCTTTCTCATCCCAACCTCGTCAAGTTATTGGGATTTGGGCGAGAGGATAGTGAGCAGTTTCTGGTTTATGAATTTTTGCATCGTGGCAGCTTGGATAACCACCTATTTGGAAGAGGTGCAAATGTTCGGCCACTATCTTGGGACACAAGGCTAAAGGTTATGATTGGAGCAGCTAGGGGACTGAATTTCCTTCACTCCTTGGAGAAGAAAATTATACATAGAGATTTTAAACCCTCCAATATACTACTTGACGagACATACACAGCTAAGTTATCAGACTTTGGCTTAGCCAAATCTTTTACTTCGCCTGATCAGACTCACGTATCAACACGGGTTATGGGAACATACGGCTATGCTGCTCCTGAGTACATTGCAACAGGTCATTTGTACGTGAAAAGTGACGTGTATGGATTTGGAATTGTTTTGGTGGAGGTGCTGACTGGCAAGAGGATAGGCGATATAACGCGCCTGTGTCAGCAAATGTCCTTGAGGGATTGGCTCAAATCAAATCTACTAAATAGAGGGAAAATAAGAAGCACTATGGATGCAAAGTTGGAGGGCAAGTATCCAACCAACTTAGCTTCACAAGTAGCTCAGCTAGCTCTCAAATGCATCCAAGCAGAGCCCAAAGTCAGGCCATCAATGAAAGAAGTCGTTGAAACATTGGAAAATTTTGAAGCAGCTAATGACAAACCAGCTGATAACATAAGAAGGGTTACTCGTTCCCGGGCAGTGCCAGATGGTGGTTAA 1278 0.4444 MGNCWSLPSGSPGDHPNSNTAPNPNNQSGSNQFSAGLSNTRLIQNGNSTSLGCSSHSGGTSRLFGPSSSNNYSTGNNTSTSLWGYENSQASRVRNEEEFPHGQILDVADLRVFTLAELKAATKNFRADTVLGEGGFGKVYKGLIRGEGLTIAIKKRNPDSLQGVAEWQSEVNFLGRLSHPNLVKLLGFGREDSEQFLVYEFLHRGSLDNHLFGRGANVRPLSWDTRLKVMIGAARGLNFLHSLEKKIIHRDFKPSNILLDETYTAKLSDFGLAKSFTSPDQTHVSTRVMGTYGYAAPEYIATGHLYVKSDVYGFGIVLVEVLTGKRIGDITRLCQQMSLRDWLKSNLLNRGKIRSTMDAKLEGKYPTNLASQVAQLALKCIQAEPKVRPSMKEVVETLENFEAANDKPADNIRRVTRSRAVPDGG 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0676 425 SUPERFAMILY Protein kinase-like (PK-like) 110 401 IPR011009 -
Ssu6g0676 425 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-RLCK-VIIA-2 FAMILY-RELATED 12 422 - -
Ssu6g0676 425 ProSitePatterns Protein kinases ATP-binding region signature. 131 155 IPR017441 GO:0005524
Ssu6g0676 425 ProSiteProfiles Protein kinase domain profile. 125 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0676 425 MobiDBLite consensus disorder prediction 1 75 - -
Ssu6g0676 425 CDD STKc_IRAK 131 401 - -
Ssu6g0676 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Ssu6g0676 425 Gene3D Transferase(Phosphotransferase) domain 1 202 420 - -
Ssu6g0676 425 Gene3D Phosphorylase Kinase; domain 1 109 201 - -
Ssu6g0676 425 PANTHER OS01G0588500 PROTEIN-RELATED 12 422 - -
Ssu6g0676 425 Pfam Protein kinase domain 127 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0676 Ssu-Chr6 10502906 10505173 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0676 111 398 Glycoside Hydrolase AT3G07070 45.329 3.24e-85 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu6g0676 Pkinase 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0676 - - gmx:100813304 715.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0676 6 10502906 10505173 Ssu6g0676 6 10502906 10505173 ECH